Locus 3028

Sequence ID 3R_DroMel_CAF1
Location 8,078,259 – 8,078,354
Length 95
Max. P 0.927057
window4872

overview

Window 2

Location 8,078,259 – 8,078,354
Length 95
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 74.06
Mean single sequence MFE -31.26
Consensus MFE -10.16
Energy contribution -10.48
Covariance contribution 0.32
Combinations/Pair 1.19
Mean z-score -2.05
Structure conservation index 0.33
SVM decision value 1.18
SVM RNA-class probability 0.927057
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8078259 95 - 27905053
UUGAGAUUUUUAUGGGUGUGUUGCA-------GUUGCAAAAGUGCAAUUAAACGG------CAAACAAU----------GCGAGACCGCAGCUUGUGCC-CAGGUAGA-UCAGAGAUCAA
....(((((...((((..(((((((-------((((((....))))))).....(------((.....)----------))......)))))..)..))-))...)))-))......... ( -28.20)
>DroPse_CAF1 26934 106 - 1
UCGAGAUUUCCGUGGGCGUGG--CAAGGUUGCAGUGCC--AGUGCAAUUAAGCAGCUAGAGCAAACAAA----------GCCAAACCGCAGCAUGUGCCUCAGGUAGAGGCAGAGAUCAA
....((((((.((((...(((--(..(((((((.....--..))))))).....((....)).......----------))))..))))......((((((.....)))))))))))).. ( -36.90)
>DroYak_CAF1 23244 93 - 1
UUGAGAUUUGUAUGGGUGUGUUGCA-------GUUGCA--AGUGCAAUUAAACGG------CAAACAAA----------GCGAGACCGCAGCUUGUGCC-CAGGUAGA-UCAGAGAUCAA
....((((((..((((..(((((((-------(((((.--...)))))).....(------(.......----------))......)))))..)..))-))..))))-))......... ( -28.10)
>DroAna_CAF1 29661 108 - 1
--CAGAUUUGUAUGGGCGAGGUGCAACGUGCUGUUGCA--AGUGCAAUUAAAUGG------CAAACAAAGGGAAACAAAGAGAAACCGCAGCAUGCGUC-CAGGUAGA-GCAGAGAUCAA
--..(.((((..((((((..((((..(((...(((((.--...)))))...)))(------(........(....)...(......))).)))).))))-))..))))-.)......... ( -26.20)
>DroPer_CAF1 24510 106 - 1
UCGAGAUUUCCGUGGGCGUGG--CAAGGUUGCAGUGCC--AGUGCAAUUAAGCAGCUAGAGCAAACAAA----------GCCAAACCGCAGCAUGUGCCUCAGGUAGAGGCAGAGAUCAA
....((((((.((((...(((--(..(((((((.....--..))))))).....((....)).......----------))))..))))......((((((.....)))))))))))).. ( -36.90)
>consensus
UCGAGAUUUCUAUGGGCGUGGUGCAA_GU___GUUGCA__AGUGCAAUUAAACGG______CAAACAAA__________GCGAAACCGCAGCAUGUGCC_CAGGUAGA_GCAGAGAUCAA
....((((((......................(((((......)))))....................................(((...((....))....))).......)))))).. (-10.16 = -10.48 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:33 2006