| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,076,962 – 8,077,060 |
| Length | 98 |
| Max. P | 0.773739 |
| Location | 8,076,962 – 8,077,060 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.58 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -13.82 |
| Energy contribution | -15.60 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773739 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8076962 98 - 27905053 UUUCCACGAGCUGUGAUCUGAAAUUCGAAGCUGGACUAUCUUC-----------UCUAGUUAUAAUUUUCUCAUUGCGAUAAGCCUUUAUCGCCGAAUAGAAUAGCUCU .......(((((((..(((...(((((.(((((((........-----------)))))))..............(((((((....)))))))))))))))))))))). ( -26.30) >DroYak_CAF1 21954 98 - 1 UUUCCACGAGCUGUGAUCUGAAAUUCGAAGCUGGACUAUCUUC-----------UCUAGUUAUAAUUUUCUCACUGCGAUAAGCCUUUAUCGCCGCAUAGAAUAGCUCU .......(((((((..(((((((.....(((((((........-----------))))))).....)))).....(((((((....))))))).....)))))))))). ( -24.40) >DroAna_CAF1 28360 108 - 1 GUUUUACGAACUGCGAUCUGAAACCCGAUGCUGGUCUAUCUCCCUUUGGACUGAUCCAGUUCCAGCUCUCUCUC-CCGAUAAGCCUUUAUCGCCGCCGAGAAUUACACU .......((((((.((((((.....)).....((((((........))))))))))))))))....((((....-.((((((....)))))).....))))........ ( -23.30) >consensus UUUCCACGAGCUGUGAUCUGAAAUUCGAAGCUGGACUAUCUUC___________UCUAGUUAUAAUUUUCUCACUGCGAUAAGCCUUUAUCGCCGCAUAGAAUAGCUCU .......(((((((..(((((((.(.(.((((((.....................)))))).).).)))).....(((((((....))))))).....)))))))))). (-13.82 = -15.60 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:31 2006