Locus 3023

Sequence ID 3R_DroMel_CAF1
Location 8,075,726 – 8,075,839
Length 113
Max. P 0.500000
window4865

overview

Window 5

Location 8,075,726 – 8,075,839
Length 113
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 84.83
Mean single sequence MFE -31.26
Consensus MFE -21.04
Energy contribution -19.76
Covariance contribution -1.28
Combinations/Pair 1.33
Mean z-score -1.65
Structure conservation index 0.67
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8075726 113 - 27905053
AUGCACUCGGUUUAUUCUAGG-AUGGACUGGAAUUAUUGGCCCGUUUUGGAUUUUUGGGCUAAGUUCAAAGGUCAAGCUCGAGAAGUAUUUUCUAAAAACGGAACAGAAAUUGG
......((((((((((....)-)))))))))((((.(((..(((((((.(((((((((((...)))))))))))......((((.....))))..)))))))..))).)))).. ( -30.50)
>DroSim_CAF1 21775 113 - 1
AUGCACUCGGUUUAUUCUAGG-AUGGACUGGAAUUAUUGGCCCGUUUUGGAUUUUUGGGCUAAGUUCAAAGGUCAAGCUCGAGGAGUAUGUUUUAAAAACCGAGCAGAAAUUGG
.....((((((((....((((-((.((((.((((..((((((((...........))))))))))))...))))..((((...))))..)))))).)))))))).......... ( -31.10)
>DroEre_CAF1 20286 113 - 1
AUGCACUCGUCUUAUUCCAGG-AUGGACUGGAAUUAUUGGCCCGUUCUGGAUUUUUGGGAUAAGUUCAAAGGUCAAGCUCGGGAAGUAUGUACUAAAAGCGGAGCAGAAAUUGG
.(((.(.((.((((((((((.-.....)))))))((((..((((..((.((((((((((.....)))))))))).))..)))).))))........)))))).)))........ ( -32.40)
>DroYak_CAF1 20702 113 - 1
AUGCACUCGACUUAUUCUAGG-AUGGACUGGAAUUAUUGGCCCGUUCUGGAUUUUUGGGCUAAGUUCAAAGGUCAAGCUCGGGAAGUAUGCACUAAAAACGGAGCAGAAAUUGG
.(((.(.((....(((((((.-.....)))))))((((..((((..((.(((((((((((...))))))))))).))..)))).))))...........))).)))........ ( -30.70)
>DroAna_CAF1 27160 106 - 1
----ACU----AUUUUCUGGGCAGGGACUGGAAAUAUUGGCCCAUUCUGGAUUUUUGGGCUAAGUUCAGAGGUCACGAUCAAAAAUUGUGUACAAGAAAUAGAACAGAAUUUGG
----.((----(..(((((..(.....(((((....((((((((...........)))))))).)))))..((((((((.....)))))).))........)..)))))..))) ( -31.60)
>consensus
AUGCACUCGGCUUAUUCUAGG_AUGGACUGGAAUUAUUGGCCCGUUCUGGAUUUUUGGGCUAAGUUCAAAGGUCAAGCUCGAGAAGUAUGUACUAAAAACGGAGCAGAAAUUGG
.............(((((((.......))))))).........(((((((((((((((((...)))))))))))..(((.....)))............))))))......... (-21.04 = -19.76 +  -1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:26 2006