Locus 302

Sequence ID 3R_DroMel_CAF1
Location 1,151,100 – 1,151,194
Length 94
Max. P 0.630008
window512

overview

Window 2

Location 1,151,100 – 1,151,194
Length 94
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 82.91
Mean single sequence MFE -15.97
Consensus MFE -11.09
Energy contribution -11.65
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -1.65
Structure conservation index 0.69
SVM decision value 0.20
SVM RNA-class probability 0.630008
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1151100 94 + 27905053
CCAAUGUUAC-----------CAAUCGGAGGUUUAUCAACCUGUUUAAAGAAUCUUGACUUUAAACAGCCAACUCAUUGCUUUCAACACGAACUCAGCUCCGAAU
..........-----------...((((((..........((((((((((........))))))))))........(((..(((.....)))..))))))))).. ( -20.30)
>DroSec_CAF1 86627 94 + 1
CCAAUGUUAC-----------CAAUCAAAGGUUUAUCAACCUGUUUAAAGAAUCUUGUCUUUAAGCACCCAACUCAUUGCUUUUGACGCGAAUUCAGCUCCAAAU
.(((((....-----------.......(((((....)))))(((((((((......)))))))))........)))))..((((..((.......))..)))). ( -17.50)
>DroSim_CAF1 82473 94 + 1
CCAAUGUUAC-----------CAAUCAAAGGUUUAUCAACCUGUUUAAAGAAUCUUGUCAUUAAGCACCCAACUCAUUGCUUUCGACGCGAAUUCAGCUCCAAAU
.....(((..-----------.......(((((....))))).......(((((.((((...(((((..........)))))..)))).).)))))))....... ( -13.40)
>DroEre_CAF1 85058 103 + 1
CCAAUGUUAACAGUACAUUGACAAUCAAGGGUCAAUAAACCUGUUCAAAGAAUCUUGACUUUACACA-CUAACUCAUUGCUUCCGACGCGAA-UCAACUCCAAAU
.((((((.......)))))).......((((((((.....((......))....)))))))).....-........((((.......)))).-............ ( -12.70)
>consensus
CCAAUGUUAC___________CAAUCAAAGGUUUAUCAACCUGUUUAAAGAAUCUUGACUUUAAACACCCAACUCAUUGCUUUCGACGCGAAUUCAGCUCCAAAU
.(((((......................(((((....)))))((((((((........))))))))........))))).......................... (-11.09 = -11.65 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:54 2006