Locus 3018

Sequence ID 3R_DroMel_CAF1
Location 8,067,125 – 8,067,221
Length 96
Max. P 0.560971
window4856

overview

Window 6

Location 8,067,125 – 8,067,221
Length 96
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 85.74
Mean single sequence MFE -29.94
Consensus MFE -20.04
Energy contribution -20.52
Covariance contribution 0.48
Combinations/Pair 1.25
Mean z-score -1.82
Structure conservation index 0.67
SVM decision value 0.05
SVM RNA-class probability 0.560971
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8067125 96 + 27905053
AAUUUAAGCCAUGUAUGGUAAGCCCACUCACAUGAAUUCCUGCCUGCAGAUGGAUUGU--GUGGGUGUGUGAAAUAGGGCUAAGCUCUAAGGCUUUGA----
.......((((....))))((((((((((((((.((((((((....)))..)))))))--))))))).......((((((...)))))).)))))...---- ( -31.10)
>DroSec_CAF1 13204 95 + 1
AAUUUAAGCCAUGUAUGGUAAGCCCACUCACAUGAAUUCCUGCCCACAGAUG-AUUGU--GUGGGUGUGUGAAAUAGGGCUAAGCUCUAAGGCUUUGA----
.....(((((...((.(((.(((((..((((((........(((((((.(..-..).)--))))))))))))....)))))..))).)).)))))...---- ( -31.80)
>DroSim_CAF1 13214 97 + 1
AAUUUAAGCCAUGUAUGGUAACCCCACUCACGUGAAUUUCUGCCCACAGAUG-AUUGUGUGUGGGUGUGUGAAAUAGGGCUAAGCUCUAAGGCUUUGA----
.....(((((..........(((((((.((((......((((....))))..-..)))).))))).))......((((((...)))))).)))))...---- ( -29.80)
>DroEre_CAF1 11751 96 + 1
AACUUAAGCCAUGUAUGGCAUGCCCACUCCCAUGAAUCCUUCCCUGCAGA----UUGU--GCGGGUGUGUGAAAUAGGGCUAAGCUCUAAGGCUUUGGGUGA
.......((((....))))..(((((...((.....(((...((((((..----...)--)))))...).))..((((((...)))))).))...))))).. ( -28.30)
>DroYak_CAF1 12005 92 + 1
AACCUAAGCCAUGUAUGGAAAGCCCACUCCCAAGAACUCCUCCCUGCAGA----UUGU--GUGGGUGUGUGAAGUAGGGCUAAGCUCCAAGGCUUGGA----
...(((((((.....((((.((((((((..((...((....(((.(((..----...)--))))).)).)).))).)))))....)))).))))))).---- ( -28.70)
>consensus
AAUUUAAGCCAUGUAUGGUAAGCCCACUCACAUGAAUUCCUGCCUGCAGAUG_AUUGU__GUGGGUGUGUGAAAUAGGGCUAAGCUCUAAGGCUUUGA____
..((.(((((...((.(((..((((..((((((........((((((.............))))))))))))....))))...))).)).))))).)).... (-20.04 = -20.52 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:17 2006