| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,064,673 – 8,064,793 |
| Length | 120 |
| Max. P | 0.664236 |
| Location | 8,064,673 – 8,064,793 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.72 |
| Mean single sequence MFE | -34.28 |
| Consensus MFE | -23.49 |
| Energy contribution | -22.83 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8064673 120 - 27905053 UUUCUGGAUAUACUUCCUAUGGAGUCGUCGCCGGCUCUAUAUGAUGCACUUUAAGAUACCAGGACCAAUGGGAUUACCAAUUCUGGGCAUAGCCUUUGAGUAUCUGAUAACCUAUAAACG .((((((.(((.((((.((((((((((....)))))))))).)).........)))))))))))...(((((.(((.((((((.((((...))))..))))...)).))))))))..... ( -30.20) >DroSec_CAF1 10831 120 - 1 UUUCUGGAUAUACUUUCUAUGGAGUCGUCGCCGACUCUAUAUGAUGCAAUUUAAGAUACCAGGACCCAUGGGAUUCCCCAUUCUGGGCAUUGCCUUUGAGUAUCUGAUAACCUAUAAACG .....((.(((....((((((((((((....)))))))))).)).........((((((((((.((((((((....))))...)))).....))..)).)))))).))).))........ ( -32.60) >DroSim_CAF1 10821 120 - 1 UUUCUGGAUAUACUUUCUAUGGAGUCGUCGCCGGCUCUAUAUGAUGCAAUUUAAGAUACCAGGACCCAUGGGAUUACCCAUUCUGGGCAUUGCCUAUGAGUAUCUGAUAACCUAUAAACG ..(((((.(((.(((((((((((((((....)))))))))).))........)))))))))))((.((((((....(((.....))).....)))))).))................... ( -31.80) >DroEre_CAF1 9295 120 - 1 UUUCUGGAUAUACUUACUAUGGAGUCGUCGCAGGCUCUAUAUGCUGCAACUGAAGCUCUCAGGACCCAUGGGAUUACCCGUUCUGGGCGUUGCCUGGGAGUAUCUGAUCACCUAUAAACG .....((..........(((((((((......)))))))))..........((.(((((((((.((((((((....))))...)))).....))))))))).))......))........ ( -37.60) >DroYak_CAF1 9499 120 - 1 UUUCUGGAUAUGCUUCCUAUGGAGUCGUCGCAGGCUCUAUAUGCUACAAUUUAAGGUGCCAGGACCCAUAGGACUUCCACUUCUGGGCGCUGCCUUCGAGUACCUGAUCAUCUAUAAACG .....(((......)))(((((((((......)))))))))............(((((.((((.......((....))((((..((((...))))..)))).))))..)))))....... ( -32.50) >DroPer_CAF1 9196 117 - 1 UGCCUGGAUAUAUUUUCUGUGGAGCCGACGGAGAUUCUACUUACUGAUGCUGAGGGUGAAGGGUCCUGUUGGAUAUCCAUUCCUUGGCGUUGCCGUGGAGUACCUACGG---AAUAAACG .(((.(((..........(((((.(((((((.((((((..(((((.........))))))))))))))))))...))))))))..)))(((.((((((.....))))))---....))). ( -41.00) >consensus UUUCUGGAUAUACUUUCUAUGGAGUCGUCGCAGGCUCUAUAUGAUGCAAUUUAAGAUACCAGGACCCAUGGGAUUACCAAUUCUGGGCAUUGCCUUUGAGUAUCUGAUAACCUAUAAACG .....(..((((.....(((((((((......)))))))))............((((((((((....(((((....)))))))))(((...))).....)))))).......))))..). (-23.49 = -22.83 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:10 2006