Locus 3013

Sequence ID 3R_DroMel_CAF1
Location 8,063,861 – 8,063,969
Length 108
Max. P 0.580144
window4847

overview

Window 7

Location 8,063,861 – 8,063,969
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.10
Mean single sequence MFE -28.70
Consensus MFE -7.74
Energy contribution -7.88
Covariance contribution 0.15
Combinations/Pair 1.58
Mean z-score -2.24
Structure conservation index 0.27
SVM decision value 0.09
SVM RNA-class probability 0.580144
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8063861 108 + 27905053
ACA----------UUGGACUUGGCCAAAGCUUUCUGCGUUUCAAAUCCGCCCAGUGUUGAAAAUAUCUUGUUGUGAGUGAAUGGCAACAAAACAUUC-AUAACA-AUUAUUUUCAUAAAC
(((----------((((....(((....)))....(((.........))))))))))((((((((..((((((((((((..((....))...)))))-))))))-).))))))))..... ( -32.20)
>DroSec_CAF1 10021 108 + 1
ACA----------UUGGAUUUGGCCGAAGCUUUCUGCAUUUCAAAUCCGCCCAGUGUUGAAAAUACCUUGUUGUGAGUGAAUGGCAAUAAAACAUUC-AUGACA-AUUAUUUUCAUAAGC
...----------..((((((((..((.((.....)).)))))))))).....((..((((((((..((((..((((((.............)))))-)..)))-).))))))))...)) ( -27.42)
>DroSim_CAF1 10011 108 + 1
ACA----------UUGGAUUUGGCCGAAGCUUUCUGCAUUUCAAAUCCGCCUAGUGUUGAAAAUAUCUUGUUGUGAGUGAAGGGCAACAAAACAUUC-AUGACA-AUUAUUUUCAUAAGC
...----------..((((((((..((.((.....)).)))))))))).....((..((((((((..((((..((((((...(....)....)))))-)..)))-).))))))))...)) ( -31.30)
>DroEre_CAF1 8482 108 + 1
AUA----------UUAAUCCUGGCCGAAGUUUUCUGCGCUUCAAAUCCGCACAGUGUUGAAAUUAUCUUGUUGUGAGUGAAUGGCAACAAAAUAUUC-AUGACG-AUAAUUUUCAUAAGC
...----------......(((((.(((((.......)))))......)).)))(((.(((((((((..((..((((((..((....))...)))))-)..)))-)))))))).)))... ( -23.60)
>DroYak_CAF1 8666 108 + 1
AUU----------UUGGUCUGGGCCGAAGCUUUCUCCAUAUGAAAUCCGCUCAGCGUUGAAAUUAGCUUGUUGUGCGUGAAUGGCAACACAACAUUC-AUGACG-AUAAUUUUCAUUAGC
...----------...(.((((((.((...((((.......)))))).)))))))..(((((.....(((((((.((((((((.........)))))-))))))-)))).)))))..... ( -26.70)
>DroPer_CAF1 8364 118 + 1
AGAUGCAUUCAGAUGAAUCAUCGCUUCUGAUUUUCGCUUUUCAAAGCCGAAGAGCGUUGAGAUAGCCCGGUUCUGGAGCCACGGAAAUGUAAU--UAAGUGAUAUGUCACUUCAAUAAGA
.((((.((((....))))))))((((((.(....((((((((......)))))))).).))).))).((.(((((......))))).))..((--(((((((....)))))).))).... ( -31.00)
>consensus
ACA__________UUGGACUUGGCCGAAGCUUUCUGCAUUUCAAAUCCGCCCAGUGUUGAAAAUAUCUUGUUGUGAGUGAAUGGCAACAAAACAUUC_AUGACA_AUUAUUUUCAUAAGC
.............((((......))))..........................((..(((((......(((((((((((..((....))...))))).))))))......)))))...)) ( -7.74 =  -7.88 +   0.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:09 2006