Locus 3011

Sequence ID 3R_DroMel_CAF1
Location 8,057,217 – 8,057,312
Length 95
Max. P 0.746239
window4845

overview

Window 5

Location 8,057,217 – 8,057,312
Length 95
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.35
Mean single sequence MFE -39.55
Consensus MFE -21.41
Energy contribution -22.13
Covariance contribution 0.73
Combinations/Pair 1.20
Mean z-score -2.09
Structure conservation index 0.54
SVM decision value 0.46
SVM RNA-class probability 0.746239
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8057217 95 - 27905053
UCUUGGUCUUGGUCUCUGGAAC---UCAGGCGACGGUUCUGGGUCCCAGGGUCUGGGUCUGGAUGUGGGUC------UGGGUCUGGGUCUGAGCCAAAGUCCAG
...(((.(((((.((((((.((---((((((....).))))))).)))((..(..(..(..(((....)))------..)..)..)..))))))).))).))). ( -40.50)
>DroSec_CAF1 5270 84 - 1
-----------GUCUCUGGAAC---UCUGGCGACGGUUCUGGGUCCCAGGGUCUGGGUAUGGAUGUGGGUC------UGGGUCUGGGUCUGAGCCAAAGUCCAG
-----------....(((((.(---(.((((..(((..(..((.((((.(..(((.((....)).)))..)------))))))..)..))).)))).))))))) ( -34.50)
>DroSim_CAF1 5266 90 - 1
-----GUCUUGGUCUCUGGAAC---UCUGGCGACGGCUCUGGGUCCCAGGGUCUGGGUCUGGAUGUGGGUC------UGGGUCUGGGUCUGAGCCAAAGUCCAG
-----(.(((.(((.(..(...---.)..).)))(((((.(((.((((.(..(..(..((......))..)------..)..))))))))))))).))).)... ( -37.30)
>DroEre_CAF1 2086 95 - 1
---------UGGUCUCUGGAACGUCUUUGGCGACGGCUCUGGGUCCCAGGGUCUGGAUCUGGGUCUGGGUCCGGGUCUGGGUCUGGGUCUGAGCCAAAGUCCAG
---------......(((((....(((((((..(((..(..((.((((.(..((((((((......))))))))..)))))))..)..))).)))))))))))) ( -46.40)
>DroYak_CAF1 2120 94 - 1
-------CUUGGUCUCUGGAAC---UCUGGCGACGGCUCUGGGUCCCAGGGUCUGGAUCUAGAUCUGGGUCUGGGUCUGGGUCUCGGUCUGAGCCAAAGUCCAG
-------........(((((.(---(.((((..(((..(((((.((((.(..(..((((((....))))))..)..))))).))))).))).)))).))))))) ( -45.70)
>DroAna_CAF1 2009 77 - 1
-----------GUC-------C---CAUGGCCUGGGGUCUGGGGUCUCUGGUCUGGAUAUGGCUCCGGGUC------UGGGUCUGGGUCUGAGCCAAAGUCCAG
-----------..(-------(---((.(((((((((((....((((.......))))..)))))))))))------)))).(((((.((.......))))))) ( -32.90)
>consensus
_________UGGUCUCUGGAAC___UCUGGCGACGGCUCUGGGUCCCAGGGUCUGGAUCUGGAUCUGGGUC______UGGGUCUGGGUCUGAGCCAAAGUCCAG
...............(((((.......((((..(((..(..((.((((.(..(((.((....)).)))..)......))))))..)..))).))))...))))) (-21.41 = -22.13 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:06 2006