| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,055,748 – 8,055,846 |
| Length | 98 |
| Max. P | 0.604836 |
| Location | 8,055,748 – 8,055,846 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.40 |
| Mean single sequence MFE | -29.57 |
| Consensus MFE | -21.76 |
| Energy contribution | -21.38 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604836 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8055748 98 + 27905053 AGGGAUUUCGGGUGACUCGGAACGAGAUCUGCGCACUGGCUGUCCAGGGUCAAGGGGCAUGUGUGGUGAGUAAACAAAAAGUAA-UAUCACGCUAAGCG--------- ..((((((((..(......)..))))))))((.(..(((((......)))))..).))..((((((((.....((.....))..-))))))))......--------- ( -24.20) >DroSec_CAF1 3785 98 + 1 AGGGAUUUCGGGUGACUAGGAACGAGAUCUGCGCCCUGGCUGUCCAGGGUCAAGGGGCAUGUGUGGUAAGUAUCUAAAUAGUAA-UAUCAUGCUAAGCG--------- ..((((((((..(......)..))))))))(((((((((....))))))).....((((((....((.(.(((....))).).)-)..))))))..)).--------- ( -29.30) >DroSim_CAF1 3780 98 + 1 AGGGAUUUCGGGUGACUCGGAAUGAGAUCUGUGCCCUGGCUGUCCAGGGUCAAGGGGCAUGUGUAGUAAGCAUCUAAAUAGUAA-UAUCAUGCUAAGCA--------- ....(((((((....).))))))....(((..(((((((....)))))))..)))(((((((((.....))).....(((....-))))))))).....--------- ( -27.00) >DroEre_CAF1 556 107 + 1 AGGGAUUUCGGGUCACCCGGAACGAGAUCUGCGCCCUGGCUGUCCACGGCCAAGGGGCAUGUGUGGUGAGUAAAUAAAUAGUAG-CAUCAUGCUAAGCUACUAUUCAA ..((((((((..((....))..))))))))((.(((((((((....))))).))))))..................((((((((-(..........)))))))))... ( -38.80) >DroWil_CAF1 555 102 + 1 AAGGAUUUCGUGUUACGGGUAAUGAGAUUUGUGCCUUGGCCGUGCACGGUAAAGGAGCUUGUAUGGUGAGUGGAUU---AGUUCAGACAACUCUGAAAA---AAAAAC ..(((((((((..........)))))))))...((((.((((((((.(((......))))))))))).)).))...---..((((((....))))))..---...... ( -25.00) >DroYak_CAF1 572 98 + 1 AGGGAUUUCGGGUGACUCGGAACGAGAUCUGCGCCCUGGCCGUCCAGGGUCAAGGAGCUUGUGUGGUGAGUUAAUAAAUAGUAG-UACCAUGCUAAGCG--------- ..((((((((..(......)..))))))))..(((((((....)))))))......((((((((((((..(((.....)))...-)))))))).)))).--------- ( -33.10) >consensus AGGGAUUUCGGGUGACUCGGAACGAGAUCUGCGCCCUGGCUGUCCAGGGUCAAGGGGCAUGUGUGGUGAGUAAAUAAAUAGUAA_UAUCAUGCUAAGCG_________ ..((((((((............))))))))((.((.(((((......))))).)).))..((((((((.................))))))))............... (-21.76 = -21.38 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:05 2006