| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,046,615 – 8,046,724 |
| Length | 109 |
| Max. P | 0.692624 |
| Location | 8,046,615 – 8,046,724 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.50 |
| Mean single sequence MFE | -41.43 |
| Consensus MFE | -27.27 |
| Energy contribution | -27.08 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.692624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8046615 109 - 27905053 AAAUAUUGAU--UUUUCAGGUGGUUCCGGAUUGGAUUACCAGGCCUACGCGAUUGGCAUGGAGGAGGUGGCUCGUGGUGACGCCGCCGUGUCCAUUGUGAUGGGCGUGAAU ..........--..((((((((((((......))))))))..(((((((((((.(((((((.((..((.((.....)).)).)).))))))).)))))).))))).)))). ( -42.70) >DroVir_CAF1 233098 107 - 1 GACG----ACUACUUGCAGGUGGCGCCGGGCUGGAUUAUCUGGCCUACGCCAUAGGCAUGGAGGAGGUGGCGCGCGGCGAUGGCGCCGUGUCUAUUGUAAUGGGCGUGAAC ..(.----.((...(((..((((((..((((..(.....)..)))).))))))..)))...))..)....(((((((((....))))))((((((....)))))))))... ( -46.50) >DroGri_CAF1 161983 105 - 1 AACC----GCU--UUGCAGGUGGGGCUGGACUGGACUAUCAGGCGUAUGCAAUCGGCAUGGAGGAGGUGGCACGCGGCGAUGCUGCCGUCUCCGUUCUGAUGGGCGUCAAC ..((----(((--.....))))).....(((....(((((((((.(((((.....)))))..((((..((((.(((....)))))))..))))).))))))))..)))... ( -42.10) >DroSim_CAF1 118611 109 - 1 AAACAUUGAU--UUUUCAGGUGGUUCUGGACUGGAUUACCAGGCCUAUGCGAUUGGCAUGGAGGAGGUGGCUCGUGGUGACGCCGCCGUGUCCAUUGUGAUGGGCGUGAAU ..........--..((((((((((((......))))))))..(((((((((((.(((((((.((..((.((.....)).)).)).))))))).))))).)))))).)))). ( -42.40) >DroYak_CAF1 117574 109 - 1 AAUUAUUAAA--CUUUUAGGCGGUUCCGGACUGGAUUACCAGGCCUACGCGAUUGGCAUGGAGGAGGUGGCUCGCGGUGAUGCCGCCGUAUCCAUUGUGAUGGGCGUGAAU ..........--....((((((....)...((((....)))))))))((((..(.(((((((...((((((((.....)).))))))...)))).))).)....))))... ( -37.20) >DroMoj_CAF1 181494 107 - 1 AACG----ACUACUUGCAGGUGGCACCGGUCUGGACUACCAAGCCUAUGCAAUAGGCAUGGAGGAAGUGGCGCGUGGUGAUGCGGCCGUGUCGAUUGUGAUGGGCGUGAAC .(((----.(((.(..(((.((((((.((((....((.(((.((((((...)))))).))).)).......((((....)))))))))))))).)))..)))).))).... ( -37.70) >consensus AACC____AC__CUUGCAGGUGGUUCCGGACUGGAUUACCAGGCCUACGCGAUUGGCAUGGAGGAGGUGGCUCGCGGUGAUGCCGCCGUGUCCAUUGUGAUGGGCGUGAAC ..................(((((..((.....)).)))))..(((((((((((.(((((((.((..((.((.....)).)).)).))))))).)))))).)))))...... (-27.27 = -27.08 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:01 2006