Locus 30

Sequence ID 3R_DroMel_CAF1
Location 263,332 – 263,422
Length 90
Max. P 0.668392
window52

overview

Window 2

Location 263,332 – 263,422
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 92.59
Mean single sequence MFE -39.23
Consensus MFE -35.28
Energy contribution -35.40
Covariance contribution 0.12
Combinations/Pair 1.04
Mean z-score -1.48
Structure conservation index 0.90
SVM decision value 0.29
SVM RNA-class probability 0.668392
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 263332 90 + 27905053
AGGCCCCAUCGCAGGACAUGGCGACUCGUCAGGACGACGAGAUUGGAGGGGGCAGCACUGAGUCUGCACCCUUUCGCGUCCUGCCCCACA
..........(((((((...((..((((((.....))))))...((((((((((((.....).)))).))))))))))))))))...... ( -39.60)
>DroSec_CAF1 7509 90 + 1
AGGCCCCUUCGCAGGACAUGGCGACUCGUCAGGACGACGAGAUUGGAGGGGGCGGCUCUGAGUCGGCACCCUUUCGCGUCCUGCCCCACA
..........(((((((...((((((((((.....))))))....((((((.((((.....)))).).))))))))))))))))...... ( -40.30)
>DroSim_CAF1 7382 90 + 1
AGGCCCCAUCGCAGGACAUGGCGACUCGUCAGGACGACGAGAUUGGAGGGGGCGGCUCUGAGUCGGCACCCUUUCGCGUCCUGCCCCACA
..........(((((((...((((((((((.....))))))....((((((.((((.....)))).).))))))))))))))))...... ( -40.30)
>DroYak_CAF1 8251 89 + 1
-GACACCAUCGCAGGACAUGGCGACUCGUCAGGACGACGAGAUUGGAGAGGGCGGGUCCGGUUCUGCACCCUUUCGCGUCCUGCCGCACA
-.........(((((((....(((((((((.....)))))).)))(((((((((((......)))))..))))))..)))))))...... ( -36.70)
>consensus
AGGCCCCAUCGCAGGACAUGGCGACUCGUCAGGACGACGAGAUUGGAGGGGGCGGCUCUGAGUCGGCACCCUUUCGCGUCCUGCCCCACA
..........(((((((...((..((((((.....))))))...((((((((((((.....))).)).))))))))))))))))...... (-35.28 = -35.40 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:50 2006