| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,032,131 – 8,032,226 |
| Length | 95 |
| Max. P | 0.695505 |
| Location | 8,032,131 – 8,032,226 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 81.37 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -14.37 |
| Energy contribution | -15.40 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695505 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8032131 95 - 27905053 CGAAAGAUA---UC---UCGUCGAAACAUAAAAGAACAAUAAACACGU--GUUUAAACAGUUGUCAGCACCGAUAACUGCUCGAGCUUCGAAUGAGGCCGAGA------ (....)...---((---(((((((...............(((((....--)))))..((((((((......)))))))).))))(((((....))))))))))------ ( -25.80) >DroSec_CAF1 98290 97 - 1 CGAAAGAUA---UC---UCGGCGAAACAUAAAAGAACAAUAAACACGUGUGUUUAAACAGUUGUCAGCACCGAUAACUGCUCGAGUUUCGAAUGAGGCCGAGA------ (....)...---((---((((((((((............((((((....))))))..((((((((......)))))))).....))))).......)))))))------ ( -28.61) >DroSim_CAF1 99533 95 - 1 CGAAAGAUA---UC---UCGGCGAAACAUAAAAGAACAAUAAACACGU--GUUUAAACAGUUGCCAGCACCGAUAACUGCUCGAGUUUCGAAUGAGGCCGAGA------ (....)...---((---((((((((((............(((((....--)))))..((((((.(......).)))))).....))))).......)))))))------ ( -21.91) >DroEre_CAF1 101349 98 - 1 CGAAAGAUAGUAUC---UCGGCGAAACAUGAGAGAACAAUAAACACGU--GUUUAAACAGUUGUCAGCACCGAUAACUGCUCCAGUUUCGUGCGAGGCCGAGA------ (....)......((---((((((((((.((.(((.....(((((....--)))))..((((((((......)))))))))))))))))))).)))))......------ ( -30.70) >DroYak_CAF1 102883 100 - 1 CGAAAGAUA-UAUCUGGUCGGCGAAACAUAAAAGAACAAUAAACACGU--GUUUAAACAGUUGUCAGCACCGAUAACUGCUCGAGUUUCGAAUGCGGCCGAGA------ (....)...-..((((((((.((((((............(((((....--)))))..((((((((......)))))))).....))))))....))))).)))------ ( -28.10) >DroAna_CAF1 106346 96 - 1 CGAAAAAUA---UC---UUCGAGAUACAUGAC---ACAAGUGAGUUGU--GUUUAAACAGUUGUCA--ACUGAUAACUGGUCGGUGCUGGAACAAUACUGAUGGCCUGU ((((.....---..---))))........(((---((((.....))))--)))....((((((((.--...))))))))(((((((.((...)).)))))))....... ( -22.50) >consensus CGAAAGAUA___UC___UCGGCGAAACAUAAAAGAACAAUAAACACGU__GUUUAAACAGUUGUCAGCACCGAUAACUGCUCGAGUUUCGAAUGAGGCCGAGA______ .......................................(((((......)))))..((((((((......))))))))((((.(((((....)))))))))....... (-14.37 = -15.40 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:48 2006