| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,031,849 – 8,031,987 |
| Length | 138 |
| Max. P | 0.889089 |
| Location | 8,031,849 – 8,031,959 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 85.32 |
| Mean single sequence MFE | -31.94 |
| Consensus MFE | -22.54 |
| Energy contribution | -22.54 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.791573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8031849 110 + 27905053 CAAUUUGCCAAAUAAACAGACUCGAGAGAGUGAGUGCUGCAUUCGAAUACGAGUGCGAGUGCGAGUGUGAAUGCGAAUGCGAAUGCGAGUAUUUGCCUCAGUGCACCAGU .....((((..........((((....))))..(..(((((((((....))))))).))..)(((.(..(((((...(((....))).)))))..)))).).)))..... ( -36.40) >DroSec_CAF1 98009 110 + 1 CAAUUUGCCAAAUAAACAGACUCGAGAGAGUGAGUGCUGCAUUCGAAUACGAGUGCGAGUGCGAGUGUGAAUGCGAAUGCGAAUGCGAGUAUUUGCCUCAGUGCACCAGU .....((((..........((((....))))..(..(((((((((....))))))).))..)(((.(..(((((...(((....))).)))))..)))).).)))..... ( -36.40) >DroSim_CAF1 99252 110 + 1 CAAUUUGCCAAAUAAACAGACUCGAGAGAGUGAGUGCUGCAUUCGAAUACGAGUGCGAGUGCGAGUGUGAAUGCGAAUGCGAAUGCGAGUAUUUGCCUCAGUGCACCAGU .....((((..........((((....))))..(..(((((((((....))))))).))..)(((.(..(((((...(((....))).)))))..)))).).)))..... ( -36.40) >DroEre_CAF1 101092 86 + 1 CAAUUUGCCAAAUAAACAGACUCGAGAGAGUGAGUGCUGCAUUCGAACACGAGUGCGAA------------------------UGUGAGUAUUUGCCUCAGUGCACCAGU .....((((..........((((....))))((((((((((((((.((....)).))))------------------------))).)))))))......).)))..... ( -23.30) >DroYak_CAF1 102626 86 + 1 CAAUUUGCCAAAUAAACAGACUCGAGAGAGUGAGUGCUGCAUUCGAACACGAGUGCGAG------------------------UGCGAGUAUUUGCCUCAGUGCACCAGU ...................((((....))))(.((((.(((((((....)))))))(((------------------------.((((....)))))))...)))))... ( -27.20) >consensus CAAUUUGCCAAAUAAACAGACUCGAGAGAGUGAGUGCUGCAUUCGAAUACGAGUGCGAGUGCGAGUGUGAAUGCGAAUGCGAAUGCGAGUAUUUGCCUCAGUGCACCAGU ...................((((....))))(.((((((((((((....)))))))).............................(((.......)))...)))))... (-22.54 = -22.54 + -0.00)
| Location | 8,031,879 – 8,031,987 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 83.30 |
| Mean single sequence MFE | -29.36 |
| Consensus MFE | -25.46 |
| Energy contribution | -25.30 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.889089 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8031879 108 - 27905053 -GUAGUCUCGAUGUAUCGGUAAUUGAUAGACUGGUGCACUGAGGCAAAUACUCGCAUUCGCAUUCGCAUUCACACUCGCACUCGCACUCGUAUUCGAAUGCAGCACUCA -((.((((((.(((((((((.........))))))))).))))))........((((((((....))..........((....))..........)))))).))..... ( -30.50) >DroSec_CAF1 98039 109 - 1 UGUAGUCUCGAUGUAUCGGUAAUUGAUAGACUGGUGCACUGAGGCAAAUACUCGCAUUCGCAUUCGCAUUCACACUCGCACUCGCACUCGUAUUCGAAUGCAGCACUCA (((.((((((.(((((((((.........))))))))).))))))........((((((((....))..........((....))..........)))))).))).... ( -30.90) >DroSim_CAF1 99282 109 - 1 UGUAGUCUCGAUGUAUCGGUAAUUGAUAGACUGGUGCACUGAGGCAAAUACUCGCAUUCGCAUUCGCAUUCACACUCGCACUCGCACUCGUAUUCGAAUGCAGCACUCA (((.((((((.(((((((((.........))))))))).))))))........((((((((....))..........((....))..........)))))).))).... ( -30.90) >DroEre_CAF1 101122 85 - 1 UGUCGUCUCGUUGUAUCGGUAAUUGAUAGACUGGUGCACUGAGGCAAAUACUCACA------------------------UUCGCACUCGUGUUCGAAUGCAGCACUCA ....((((((.(((((((((.........))))))))).)))))).........((------------------------((((.((....)).))))))......... ( -25.90) >DroYak_CAF1 102656 85 - 1 UGCCGUCUCGUUGUAUCGGUAAUUGAUAGACUGGUGCACUGAGGCAAAUACUCGCA------------------------CUCGCACUCGUGUUCGAAUGCAGCACUCA (((.((((((.(((((((((.........))))))))).))))))........(((------------------------.(((.((....)).))).))).))).... ( -28.60) >consensus UGUAGUCUCGAUGUAUCGGUAAUUGAUAGACUGGUGCACUGAGGCAAAUACUCGCAUUCGCAUUCGCAUUCACACUCGCACUCGCACUCGUAUUCGAAUGCAGCACUCA .((.((((((.(((((((((.........))))))))).))))))......................................(((.(((....))).))).))..... (-25.46 = -25.30 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:47 2006