Locus 2996

Sequence ID 3R_DroMel_CAF1
Location 8,025,443 – 8,025,541
Length 98
Max. P 0.562306
window4821

overview

Window 1

Location 8,025,443 – 8,025,541
Length 98
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 80.84
Mean single sequence MFE -26.58
Consensus MFE -14.10
Energy contribution -14.97
Covariance contribution 0.86
Combinations/Pair 1.10
Mean z-score -2.12
Structure conservation index 0.53
SVM decision value 0.06
SVM RNA-class probability 0.562306
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8025443 98 + 27905053
GCCUUUAGCUCCGGGAAAAAUAAAUACAUUUAAAUGUAUAAAACGCUCUCUUUCUCUCCGCUCCGUCCCUCUGUUGG-UCCUGCUGCGGAGCUGUGGCU
(((..(((((((((((.......((((((....)))))).......)))).........((..((..((......))-..).)..))))))))).))). ( -27.94)
>DroSec_CAF1 91656 94 + 1
GCCUUUAGCUCCGGGAAAAAUAAAUACAUUUAAUUGUAUAAAACCCUCU----CCCUCCGCUGCAUCCCUCUGUUGG-UCCUGCCGGCGAGCUGUGGCU
(((..((((((.((((.......(((((......))))).........)----)))...((((((..((......))-...)).)))))))))).))). ( -28.39)
>DroSim_CAF1 92901 94 + 1
GCCUUUAGCUCCGGGAAAAAUAAAUACAUUUAAAUGUAUAAAACCCUCU----CCCUCCGCUGCAUCCCUCUGUUGG-UCCUGCCGGCGAGCUGUGGCU
(((..((((((.((((.......((((((....)))))).........)----)))...((((((..((......))-...)).)))))))))).))). ( -28.49)
>DroEre_CAF1 94523 94 + 1
GCCUUUGGCUCCGGGAAAAAUAAAUACAUUUAAAUGUAUAAAACGCUCUCC----CAGUCCCCAGUCCCCCUGUUGG-UCCUGCCGCCGAGCUGUGGCU
(((..((((((.((((.......((((((....)))))).........)))----)......(((..((......))-..))).....)))))).))). ( -24.79)
>DroYak_CAF1 96033 98 + 1
GCCUUUGGCUCCGGGAAAAAUAAAUACAUUUAAAUGUAUAAAACGCUCUUUCUGCCUCUCCUCUGGCCCUCUGUUGG-UCCUGCCGCCGAGCUGUGGCU
(((((((((..(((((..((((.((((((....))))))..............(((........)))....))))..-)))))..))))))....))). ( -27.30)
>DroAna_CAF1 99931 96 + 1
UCCUUUGGCUCCGGGAAAAAUAAAUACAUUUAACUGUAUAAAACCCUUCAC--UCCUCGGGCGUAUUUUUCCUUUCUUUCCAGCUG-CGAGAGAAAGCU
......((((..((((((((((.(((((......)))))....(((.....--.....)))..))))))))))((((((((....)-.))))))))))) ( -22.60)
>consensus
GCCUUUAGCUCCGGGAAAAAUAAAUACAUUUAAAUGUAUAAAACCCUCU____CCCUCCGCUCCAUCCCUCUGUUGG_UCCUGCCGCCGAGCUGUGGCU
(((..(((((((((((.......(((((......)))))............................((......)).))))).....)))))).))). (-14.10 = -14.97 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:43 2006