Locus 2995

Sequence ID 3R_DroMel_CAF1
Location 8,023,221 – 8,023,312
Length 91
Max. P 0.581012
window4820

overview

Window 0

Location 8,023,221 – 8,023,312
Length 91
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 81.06
Mean single sequence MFE -18.73
Consensus MFE -12.42
Energy contribution -12.42
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.66
SVM decision value 0.09
SVM RNA-class probability 0.581012
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8023221 91 + 27905053
UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAACUUGUGCAAAGCACUGC-AAUGCCAUUGUUU-UUCAUUCCCC-AC---C-CCCAGGA-UGCUCC
.((((((((((((........)))))))..((((....((((...))))...-..)))).......-..........-..---.-.....))-)))... ( -17.10)
>DroPse_CAF1 107600 95 + 1
UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAACUUGGGCAAAGCACUGCAAAUGCCAUUGUUUUUUCAUUCCUCCGC---CAAACAGGC-CUCCCC
(((.(.(((((((........))))))).).)))....(((.((((((..((....))...))))))...........((---(.....)))-..))). ( -19.10)
>DroEre_CAF1 92295 92 + 1
UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAAGUUGUGCAAAGCACUGCGAAUGCCAUUGUUU-UUCAUUCCCC-AC---CCUCCA-AA-UGCUCC
.((((((((((((........)))))))..((((.((.((((...)))).))...)))).......-..........-..---......-))-)))... ( -18.60)
>DroMoj_CAF1 157117 83 + 1
--UGUUGCAUAAAAAUUAAUAUUUAUGCGAGGCAACUUGUGCAAAGCACUGCAAAUGCCAUUGUUU-C-CAACC----GG-------CA-AACAGCCCC
--..(((((((((........)))))))))((((.....((((......))))..)))).((((((-(-(....----))-------.)-))))).... ( -21.80)
>DroAna_CAF1 97643 92 + 1
UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAACUUGUGCAAAACACUGCGAAUGCCAUUGUUU-UCCAACCCUC-ACAACCGCCCAC---UU--UU
((((..(((((((........)))))))..((((.....((((......))))..)))).......-.........)-))).........---..--.. ( -16.70)
>DroPer_CAF1 105826 95 + 1
UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAACUUGGGCAAAGCACUGCAAAUGCCAUUGUUUUUUCAUUCCUCCGC---CAAACAGGC-CUCCCC
(((.(.(((((((........))))))).).)))....(((.((((((..((....))...))))))...........((---(.....)))-..))). ( -19.10)
>consensus
UGUGUUGCAUAAAAAUUAAAAUUUAUGCCAGGCAACUUGUGCAAAGCACUGCAAAUGCCAUUGUUU_UUCAUUCCUC_AC___C_ACCAGGA_UGCCCC
......(((((((........)))))))..((((......(((......)))...))))........................................ (-12.42 = -12.42 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:42 2006