Locus 2992

Sequence ID 3R_DroMel_CAF1
Location 8,015,430 – 8,015,522
Length 92
Max. P 0.836102
window4812

overview

Window 2

Location 8,015,430 – 8,015,522
Length 92
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 86.88
Mean single sequence MFE -15.90
Consensus MFE -13.48
Energy contribution -14.23
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.85
SVM decision value 0.73
SVM RNA-class probability 0.836102
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8015430 92 + 27905053
UUUAGAACAAGGGUUAUAUUAUAGCCGAAGUCCCUUCUUCAAUCCCUACAGAAUGUCUUUCUGAACACAAAAACUGUA--AGUAUAUCCCUUCU
........(((((.((((((((((..((((......))))........(((((.....)))))..........)))).--)))))).))))).. ( -20.60)
>DroSec_CAF1 81677 85 + 1
UUUAGAACAAGGGUUAUAUUAUAGCCGAA---------UCAAUCCCAACAGAAUGUCCUUCUGAACACAAUAUAUGUAAAAGUAUAUCCCUCCU
.........((((.((((((.........---------..........(((((.....)))))...(((.....)))...)))))).))))... ( -12.50)
>DroSim_CAF1 81992 94 + 1
UUUAGAACAAGGGUUAUAUUAUAGCCGAAAUCCCUUCUUCAAUCCCUACAGAAUGUCUUUCUGAACAUAAUAAAUGUAAAAGUAUAUCCCUCCU
.........((((.((((((............................(((((.....))))).((((.....))))...)))))).))))... ( -14.60)
>consensus
UUUAGAACAAGGGUUAUAUUAUAGCCGAA_UCCCUUCUUCAAUCCCUACAGAAUGUCUUUCUGAACACAAUAAAUGUAAAAGUAUAUCCCUCCU
.........((((.((((((......((((......))))........(((((.....))))).................)))))).))))... (-13.48 = -14.23 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:35 2006