Locus 2991

Sequence ID 3R_DroMel_CAF1
Location 8,014,644 – 8,014,735
Length 91
Max. P 0.506318
window4811

overview

Window 1

Location 8,014,644 – 8,014,735
Length 91
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 83.42
Mean single sequence MFE -26.33
Consensus MFE -18.39
Energy contribution -18.60
Covariance contribution 0.21
Combinations/Pair 1.22
Mean z-score -1.64
Structure conservation index 0.70
SVM decision value -0.05
SVM RNA-class probability 0.506318
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8014644 91 - 27905053
GAGUCGUCCGGCUCUCGG--ACACCAGCACACAUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUCUGCUCGUUGU
((((((((((.....)))--))((.(((.(((.....)))((((((.((((.....))))..))))))....))).))))))).......... ( -28.90)
>DroSec_CAF1 80891 91 - 1
GAGUCGUCCGACUCUCGG--ACACCAGCACACGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUUCGCUCGUUGU
((((.(((((.....)))--))((.(((.(((.....)))((((((.((((.....))))..))))))....))).))......))))..... ( -29.40)
>DroSim_CAF1 81207 91 - 1
GAGUCGUCCGGCUCUCGG--ACACCAGCACACGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUUUGCUCGUUGU
((((.(((((.....)))--))((.(((.(((.....)))((((((.((((.....))))..))))))....))).))......))))..... ( -28.40)
>DroEre_CAF1 83690 91 - 1
GAGUCGUCCUGUUCUCGG--ACACCAGCACACGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUCUGCUCUUCGU
(((((((((.......))--))((.(((.(((.....)))((((((.((((.....))))..))))))....))).))))))).......... ( -27.10)
>DroYak_CAF1 85129 93 - 1
GAGUCGUCCUCUUCUCGGGAACACCAGCACACGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUCUGCUCUUCGU
((((..((((......)))).(((.(((.(((.....)))((((((.((((.....))))..))))))....))).))).....))))..... ( -26.20)
>DroAna_CAF1 88976 71 - 1
GAA---------UUGCAA--ACUUUAGCAGAUGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCGAUUGCUUCAGCUU-UGACUC----------
...---------((((..--......))))..((((((((((((((.((((.....))))..)))))))...)).)-))))..---------- ( -18.00)
>consensus
GAGUCGUCCGGCUCUCGG__ACACCAGCACACGUCGAGUGGCAAUUUGCAAUGAAUUUGCUCAAUUGCACCAGCUUGUGAUUCUGCUCGUUGU
((((......)))).......(((.(((.(((.....)))((((((.((((.....))))..))))))....))).))).............. (-18.39 = -18.60 +   0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:34 2006