| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,005,457 – 8,005,562 |
| Length | 105 |
| Max. P | 0.546554 |
| Location | 8,005,457 – 8,005,562 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.02 |
| Mean single sequence MFE | -32.77 |
| Consensus MFE | -20.19 |
| Energy contribution | -19.13 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8005457 105 - 27905053 UGGGUGCCCAG---UACGUAAAGUCGGCCGUGCACGAGUGUUG------GGAACUUA-AACAGAGUUCCUGCCAGACAACUGCCUAAUGGCUGUGGCUAAUGAAUGAUGACAGCA (((....)))(---(.(((...((..(((......(..((..(------(((((((.-....))))))))..))..).((.(((....))).)))))..)).....))))).... ( -29.20) >DroPse_CAF1 89281 111 - 1 UCGGGGCACAG---GAAGCU-AGUCAGUUAUGUGCAAGUGUUGAAGGGGGGGACUUAAAACACAGUCCUAGGUAGACAACUGCCUAAUGGCUGUGGCUAAUGAAUGAUGACAGCA ..((((((((.---..((((-....)))).)))))..(((((....(((....)))..)))))..)))(((((((....)))))))...(((((.((........).).))))). ( -35.30) >DroEre_CAF1 74496 106 - 1 UGGG-GGCCAGGAGGAAGUA-AGUCGGCUGUGCACGAGUGUUG------GGAACUUA-AACAGAGUUCCUGCCAGACAACUGCCUAAUGGCUGUGGCUAAUGAAUGAUGACAGCA ..(.-(((((..(((.(((.-.((((((...(((....))).(------(((((((.-....))))))))))).))).))).)))..))))).).(((.............))). ( -33.92) >DroYak_CAF1 75797 103 - 1 UGGG-GCCCAG---GAAGUA-AGUCGGCUGUGCACGAGUGUUG------GGAACUUA-AACAGAGUUCCUGCCAGACAACUGCCUAAUGGCUGUGGCUAAUGAAUGAUGACAGCA ...(-(((((.---......-.((((((...(((....))).(------(((((((.-....))))))))))).)))....(((....))))).))))................. ( -29.40) >DroAna_CAF1 79590 101 - 1 CAGGGAGUCAG---G-----AAGUGAGCUAUGUAAGAGUGUUG------GGGGCUUAAAACAGAGUUCCUAGCAGACAAGUGCCUAAUGGCUGUGGCUAAUGAAUGAUGACAGCA ...(..((((.---.-----..((.((((((.......(((((------(((((((......)))))))))))).......(((....))).)))))).))...))))..).... ( -31.50) >DroPer_CAF1 87519 111 - 1 UCGGGGCACAG---GAAGCU-AGUCAGUUAUGUGCAAGUGUUGAAGGGGGGGACUUAAAACACAGUCCUAGGCAGACAACUGCCUAAUGGCUGUGGCUAAUGAAUGAUGACAGCA ..((((((((.---..((((-....)))).)))))..(((((....(((....)))..)))))..)))(((((((....)))))))...(((((.((........).).))))). ( -37.30) >consensus UGGGGGCCCAG___GAAGUA_AGUCAGCUAUGCACGAGUGUUG______GGAACUUA_AACAGAGUUCCUGCCAGACAACUGCCUAAUGGCUGUGGCUAAUGAAUGAUGACAGCA ......................((((......((..(((..........(((((((......))))))).......((...(((....)))..)))))..)).....)))).... (-20.19 = -19.13 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:33 2006