| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,141,953 – 1,142,046 |
| Length | 93 |
| Max. P | 0.680644 |
| Location | 1,141,953 – 1,142,046 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 85.74 |
| Mean single sequence MFE | -37.00 |
| Consensus MFE | -31.31 |
| Energy contribution | -31.12 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.680644 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1141953 93 + 27905053 --GACGCGGUCUUGGGUUCGGUCUCGGUCUGGAUCGGGGCUACGGAUUACGAUUGGGUCUAGGUCUAGGUCUAGGUCUCCAGUGAGCCGCGAAGG --..((((((((((((...(..((.(..(((((((.(((((.((.....))....))))).)))))))..).))..)))))).)).))))).... ( -39.10) >DroSec_CAF1 75675 93 + 1 --GACUCGGUCUUGGAUUCGGUCUCGGUCUGGAUCGGGGCUGGGGAUUACGAUUGGGUCUAGGUCUAGGUCUAGGUCUCCAGUGAGCCGCGAAGG --..(.((((((((((...(..((.(..(((((((.(((((.((........)).))))).)))))))..).))..)))))).)).))).).... ( -34.10) >DroEre_CAF1 76085 95 + 1 CGGUCUCGGUCUCGGUUUCGGUUUUGGUCGGGAUCGGGGCUGGGGCUUAUGAUUGGGUCUAGGUCUAGGUCUAGGUCUCCAGCGAGCCGCGAAGG ((((((((((((((..(........)..)))))))))))))).(((((.((...((..(((((......)))))..)).))..)))))....... ( -40.00) >DroYak_CAF1 98407 89 + 1 CGGUUUCGGCUUCGAUUUCGGUUUCGGUCUGGAUCGGGGCUGGGGCUUAUGAUUGGGUCUAGG------UCUAGGUCUCCAGUGAGCCGCGAAGG .........(((((...(((((..((((....))))..)))))(((((((....((..(((..------..)))..))...))))))).))))). ( -34.80) >consensus __GACUCGGUCUCGGUUUCGGUCUCGGUCUGGAUCGGGGCUGGGGAUUACGAUUGGGUCUAGGUCUAGGUCUAGGUCUCCAGUGAGCCGCGAAGG .....((((((((((.(((((.......)))))))))))))))(((((((....((..(((((......)))))..))...)))))))....... (-31.31 = -31.12 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:48 2006