| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,000,757 – 8,000,847 |
| Length | 90 |
| Max. P | 0.856728 |
| Location | 8,000,757 – 8,000,847 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.66 |
| Mean single sequence MFE | -35.53 |
| Consensus MFE | -21.35 |
| Energy contribution | -23.30 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.856728 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8000757 90 + 27905053 -----------CAUGGGCGUGGGUGCGGAGGGGGCGUUUCCCCAUUAACUCUGAGUUGAUUCUUUCACACCCGCCACAGGGGGCCGCCACCAUAUUUUUGG-- -----------....((((.(((((.((((((((....)))))((((((.....))))))...))).)))))(((......))))))).(((......)))-- ( -34.60) >DroPse_CAF1 80511 82 + 1 -----------UUUGUGCGAGUGU-----GGGGGCGUUUCCACAUUAACUCCGAGUCGAGUUCUUCGCACCAUCCACAGGGGGUCGGAG--GUCUCUUUC--- -----------...((...(((((-----((((....))))))))).))........(((..(((((.(((.(((...)))))))))))--..)))....--- ( -24.90) >DroSec_CAF1 67108 91 + 1 -----------CAUGGGCGUGGGUGUGGAGGGGGCGUUUCCCCAUUAACUCUGAGUUGAUUCUUUCACACCCGCCACAGGGGGCCACCACCAUAUUUUUUG-G -----------.(((((.((((((((((((((((....)))))((((((.....))))))...))))))))))))...((......)).))))........-. ( -35.80) >DroSim_CAF1 67325 92 + 1 -----------CAUGGGCGUGGGUGUGGAGGGGGCGUUUCCCUAUUAACUCUGAGUUGAUUCUUUCACACCCGCCACAGGGGGCCACCACCAUAUUUUUUGGG -----------.(((((.((((((((((((((((.....))).((((((.....)))))).))))))))))))))...((......)).)))).......... ( -34.10) >DroEre_CAF1 69779 88 + 1 -----------CAUGGGCGUGGGUGUGGAGGGGGCGU-UCCCCAUUAACGCUGAGUUGAUUCUUUCGCCCCCUCCACAAAGGGCCACCACCAUAUUUUGG--- -----------.((((..((((.(((((((((((((.-.....((((((.....)))))).....))))))))))))).....))))..)))).......--- ( -43.50) >DroYak_CAF1 70987 101 + 1 CUUCUCAUGGGCAUGGGCGUGGGUGUGGAGGGGGCGU-UCCCCAUUAACUCUGAGUUGAUUCUUUCGCACCCUCCACAGAAGGCCAUCACCAUAUUUGUGG-G ...(((((..(.((((..((((.(((((((((.(((.-.....((((((.....)))))).....))).))))))))).....))))..)))).)..))))-) ( -40.30) >consensus ___________CAUGGGCGUGGGUGUGGAGGGGGCGUUUCCCCAUUAACUCUGAGUUGAUUCUUUCACACCCGCCACAGGGGGCCACCACCAUAUUUUUGG__ ...............(((((((((((((((((((....)))))((((((.....))))))...)))))))))))..(....)))).................. (-21.35 = -23.30 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:30 2006