Locus 2987

Sequence ID 3R_DroMel_CAF1
Location 8,000,357 – 8,000,471
Length 114
Max. P 0.608532
window4806

overview

Window 6

Location 8,000,357 – 8,000,471
Length 114
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 80.92
Mean single sequence MFE -27.33
Consensus MFE -16.08
Energy contribution -16.97
Covariance contribution 0.89
Combinations/Pair 1.08
Mean z-score -1.88
Structure conservation index 0.59
SVM decision value 0.15
SVM RNA-class probability 0.608532
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8000357 114 - 27905053
UUGUCUUAC-CGACCGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGUCUGCCAC-UGGUACUCGUACUCUCACUCGUACUGGUACUG-
.........-.(((.((((((((.((((((((((((((.......)))))..)))))))))..))))))))...)))......-.((((((.((((........)))).)))))).- ( -31.00)
>DroPse_CAF1 79882 104 - 1
UUGUCUUACCCGAAGCAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGUCUGCUAC-UGGUACUCCUCC------------UGUUCCGGG
........((((.((((((((...((((((((((((((.......)))))..)))))))))(((.((....)).)))))))..-.((....))...------------)))).)))) ( -27.00)
>DroSec_CAF1 66742 104 - 1
UUGUCUUAC-CGACCGAAGCAAAACUUUUGCAUUUUCCCAUUUUCGGAAAACGUGCAAAAGGACUUCUUUUCAUGUCGGCCACGUGGUACUCGCACG-----------UGGUACAG-
........(-((((.((((.....((((((((((((((.......)))))..))))))))).....))))....)))))(((((((.......))))-----------))).....- ( -33.20)
>DroEre_CAF1 69420 102 - 1
UUGUCUUAC-CGACCGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGUCUGCCGC-UGGUACUCGUAC------------UCGUACUG-
.........-.(((.((((((((.((((((((((((((.......)))))..)))))))))..))))))))...)))......-.(((((......------------..))))).- ( -24.30)
>DroWil_CAF1 98182 100 - 1
UUGCCUUGU-U--CUGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGGCUCC----UGCUCCUCG-AC--UCCA------UGGCUAUG-
..(((.((.-.--..((((((((.((((((((((((((.......)))))..)))))))))..))))))))...(((...----.))).....-..--..))------.)))....- ( -24.30)
>DroAna_CAF1 74017 102 - 1
UUGUCUUUC-CGAACGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGUCUGCUCC-UUGUGGUCCUGC------------UGUUCCUG-
.........-.((((((((((((.((((((((((((((.......)))))..)))))))))..))))))))((.(.(..(...-..)..).).)).------------.))))...- ( -24.20)
>consensus
UUGUCUUAC_CGACCGAAGCAAAACUUUUGCAUUUUCUCAUUUUCGGAAAAUGUGCAAAGGGAUUUGUUUUCAUGUCUGCCAC_UGGUACUCGUAC____________UGGUACUG_
...........(((.((((((((.((((((((((((((.......)))))..)))))))))..))))))))...)))........................................ (-16.08 = -16.97 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:29 2006