Locus 2984

Sequence ID 3R_DroMel_CAF1
Location 7,989,659 – 7,989,761
Length 102
Max. P 0.547138
window4801

overview

Window 1

Location 7,989,659 – 7,989,761
Length 102
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 79.57
Mean single sequence MFE -35.08
Consensus MFE -17.58
Energy contribution -18.90
Covariance contribution 1.32
Combinations/Pair 1.25
Mean z-score -1.91
Structure conservation index 0.50
SVM decision value 0.03
SVM RNA-class probability 0.547138
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7989659 102 + 27905053
AUUAAAUCCGCAGCUGCCUCAGGUGGAGCAACGUCUGCAACUGCAACUUCUGUUGUAACUUCGACAGGCGGUGCAACUGGC------GUUUCAAUGGCAGCUUCUGAU
.....(((.(.(((((((.....((((((..((..((((.((((.....((((((......))))))))))))))..))..------))))))..))))))).).))) ( -36.70)
>DroSec_CAF1 55871 102 + 1
AUUAAAUCAGCAGCUGCCUCAGGUGGAGCAACGUCUGCAACUACAACUUCUGUUGUAACUUCGACAGGCGGUUGAACUAGC------GUUUCAACGGCAGCCUCUGUU
.......(((..((((((.....((((((..(((((((...((((((....)))))).....).))))))((((...))))------))))))..))))))..))).. ( -32.90)
>DroSim_CAF1 56119 102 + 1
AUUAAAUCAGCAGCUGCCUCAGGUGGAGCAACGUCUGCAACUGCAACUUCUGUUGUAACUUCGACAGGCGGUGCAACUGGC------GUUUCAACGGCAGCCUCUGUU
.......(((..((((((.....((((((..((..((((.((((.....((((((......))))))))))))))..))..------))))))..))))))..))).. ( -35.90)
>DroEre_CAF1 58334 93 + 1
AUUAAAG---CAGUUGCCUCAGAUGGAGCAGGGUCUGCAACUGCAGCUUCUGUUGUAACUUCG------------ACUGCCUGCGUGGUUUCUACGGCGGCCUCUAAU
......(---((((((....((.((.(((((((.((((....)))).))))))).)).)).))------------)))))....(.(((..(....)..))).).... ( -30.10)
>DroYak_CAF1 58641 108 + 1
AUUAAUGCUGCAGCUGCCUCAGGAGCAGCAGGGUCUGCAACUGUAACUUCUGUUGUGACUUCGGCAGGCGUUGCAACUGGCUGCGUGGCUUCCACGACCGCUUCUGAU
......((....))....((((((((.((((.((((((....((.((.......)).))....)))))).))))....((...(((((...))))).)))))))))). ( -39.80)
>consensus
AUUAAAUCAGCAGCUGCCUCAGGUGGAGCAACGUCUGCAACUGCAACUUCUGUUGUAACUUCGACAGGCGGUGCAACUGGC______GUUUCAACGGCAGCCUCUGAU
............((((((.....((((((...((.(((....))))).(((((((......)))))))...................))))))..))))))....... (-17.58 = -18.90 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:24 2006