Locus 2983

Sequence ID 3R_DroMel_CAF1
Location 7,987,850 – 7,987,946
Length 96
Max. P 0.695280
window4800

overview

Window 0

Location 7,987,850 – 7,987,946
Length 96
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 88.40
Mean single sequence MFE -28.90
Consensus MFE -22.84
Energy contribution -24.87
Covariance contribution 2.03
Combinations/Pair 1.03
Mean z-score -2.50
Structure conservation index 0.79
SVM decision value 0.34
SVM RNA-class probability 0.695280
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7987850 96 + 27905053
--GUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCGAAUUCUGCCCAUAUACAAGCCCAACAAAAAAAGGAAAAC
--((((((((((.((((((((((((.(((...((.....))..)))))))).)))))))....))))))))))......................... ( -24.50)
>DroSec_CAF1 54027 98 + 1
GUGUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCCAAUUCUGCCCAUAUACAAGCCCAACAAAAAAAGGGAAAC
((((((((((((.((((((.((......)).))))))..........((((.....))))...))))))))))))...(((..........))).... ( -30.20)
>DroSim_CAF1 54290 97 + 1
GUGUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCCAAUUCUGCCCAUAUACAAGCCCAACAAA-AAAGGGAAAC
((((((((((((.((((((.((......)).))))))..........((((.....))))...))))))))))))...(((......-...))).... ( -30.30)
>DroEre_CAF1 56545 94 + 1
GUGUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCGAAUUCUGCCCAUAUACAAGCCCA----AAAAAGGGAAAC
((((((((((((.((((((((((((.(((...((.....))..)))))))).)))))))....))))))))))))...(((.----.....))).... ( -33.20)
>DroYak_CAF1 56779 94 + 1
GUGUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCGAAUUCUGCCCAUAUACAAGCCCA----AAAAAGGGAAAC
((((((((((((.((((((((((((.(((...((.....))..)))))))).)))))))....))))))))))))...(((.----.....))).... ( -33.20)
>DroAna_CAF1 60986 95 + 1
GUGUGUGAGCAGCCUAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGAUCUCUUGGAUUCAAC---UACCCUCGCCCACCCAGUCGAGGGUAAC
((((.(((.((..(((......)))..)).....))).)))).......(((((.....)))))...---((((((((.(......).)))))))).. ( -22.00)
>consensus
GUGUGUGGGUAGCCGAUAGAUUUAGAUUGAACUGUCGAACAUGUAACUGGGUUCUGUCGAAUUCUGCCCAUAUACAAGCCCAACAAAAAAAGGGAAAC
((((((((((((.((((((((((((.(((...((.....))..)))))))).)))))))....))))))))))))...(((..........))).... (-22.84 = -24.87 +   2.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:23 2006