Locus 2982

Sequence ID 3R_DroMel_CAF1
Location 7,967,768 – 7,967,863
Length 95
Max. P 0.500000
window4799

overview

Window 9

Location 7,967,768 – 7,967,863
Length 95
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 78.54
Mean single sequence MFE -29.63
Consensus MFE -19.61
Energy contribution -21.20
Covariance contribution 1.59
Combinations/Pair 1.08
Mean z-score -1.15
Structure conservation index 0.66
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7967768 95 - 27905053
------------------CCUCGUCGGACGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUUGGAGCACGCUACUUAAAGGCACUUCAGCAG--AUGACA
------------------((.....)).(((((((....(((((((((.((((....))))..)))(((((......)))))...........))))))....))))--)))... ( -29.70)
>DroSec_CAF1 33921 113 - 1
CCUCGUCUUUAUCCUCGUCCUCGUCGGAGGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUUGGAGCAGGCUACUUAAAGGCACUUCAGCAG--AUGACA
....(((....(((.((....))..))).((((((....((((((...........((((((((.....((((....))))))))))))....))))))....))))--))))). ( -34.86)
>DroSim_CAF1 34290 95 - 1
------------------CCUCGUCGGAGGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUUGGAGCACGCUACUUAAAGGCACUUCAGCAG--AUGACA
------------------((((....))))(((((....(((((((((.((((....))))..)))(((((......)))))...........))))))....))))--)..... ( -29.80)
>DroEre_CAF1 36243 105 - 1
--UCAUCCUCAUCC------UCGUCGGAGGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUUGGAGCACGCUACUUAAAGGCACUUCAGCAG--AUGACA
--......(((((.------..((.((((((((..((..((((..(((.((((....))))..)))(((((......))))))))).))....)))).)))).)).)--)))).. ( -30.40)
>DroYak_CAF1 34942 113 - 1
UCUCGUCCUCAUCCUGGUCGUCGGAGGAGGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUCGGAGCACGCUACUUAAAGGCACUUCAGCAG--AUGACA
....((((((.(((........))).)))((((((....(((((((((.((((....))))..)))(((((......)))))...........))))))....))))--))))). ( -36.50)
>DroAna_CAF1 42154 78 - 1
-------------------------------------CUGUGUUUGCCAGCUAUUUGUAGCCUGUCGUUUUCCGUUUGAAGCACGCUACUUAAAGCCACUUCACCGGCACUGACA
-------------------------------------...((((((((.((((....))))...............(((((...(((......)))..)))))..))))..)))) ( -16.50)
>consensus
__________________CCUCGUCGGAGGUCUGUGUUUGUGUUUGACUGCUAUUUGUAGCCUGUCGCUCUCCGUUUGGAGCACGCUACUUAAAGGCACUUCAGCAG__AUGACA
......................((((.....((((....(((((((((.((((....))))..)))(((((......)))))...........))))))....))))...)))). (-19.61 = -21.20 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:22 2006