Locus 2981

Sequence ID 3R_DroMel_CAF1
Location 7,964,492 – 7,964,583
Length 91
Max. P 0.752298
window4798

overview

Window 8

Location 7,964,492 – 7,964,583
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 83.70
Mean single sequence MFE -16.38
Consensus MFE -15.41
Energy contribution -15.60
Covariance contribution 0.19
Combinations/Pair 1.09
Mean z-score -1.39
Structure conservation index 0.94
SVM decision value 0.48
SVM RNA-class probability 0.752298
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7964492 91 + 27905053
AAAGUAGCAAACAGAUUAGGUUUUUAAUGGUAUUCAAACUGAUUUGAAGAAGUAAUCGAUUUGAGUCCGUUGAAGAAAUUUUAUUUUAUUU
....................((((((((((.(((((((.(((((.........))))).)))))))))))))))))............... ( -18.00)
>DroSec_CAF1 30725 90 + 1
AAAGUAGCAUGCAGAUUUAGUUUUUAAUGGUAUUUAAACUGAUUUCAAGAAGUAAUCGAUUUGAGUCCGUUGAAGAAAUUUUAUUUUAU-U
..(((((.(((.(((((...((((((((((.(((((((.(((((.(.....).))))).))))))))))))))))))))))))).))))-) ( -17.00)
>DroSim_CAF1 31066 91 + 1
AAAGUAGCAUGCAGAUUUAGUUUUUAAUGGUAUUUAAACUGAUUUCAAGAAGUAAUCGAUUUGAGUCCGUUGAAGAAAUUUUAUUUUAUUU
.((((((.(((.(((((...((((((((((.(((((((.(((((.(.....).))))).))))))))))))))))))))))))).)))))) ( -17.90)
>DroEre_CAF1 33066 74 + 1
GAAG-----------------GUUUAAUGGUAUGUAAGCUGAUUUCAGAAAGUAAUCGACUUGAGUCCGUUGAAGAAAUUUUAUUUUAUUU
....-----------------.((((((((....((((.(((((.(.....).))))).))))...))))))))................. ( -12.60)
>consensus
AAAGUAGCAUGCAGAUUUAGUUUUUAAUGGUAUUUAAACUGAUUUCAAGAAGUAAUCGAUUUGAGUCCGUUGAAGAAAUUUUAUUUUAUUU
....................((((((((((.(((((((.(((((.........))))).)))))))))))))))))............... (-15.41 = -15.60 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:21 2006