Locus 2980

Sequence ID 3R_DroMel_CAF1
Location 7,963,193 – 7,963,284
Length 91
Max. P 0.560430
window4797

overview

Window 7

Location 7,963,193 – 7,963,284
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 92.31
Mean single sequence MFE -19.45
Consensus MFE -16.94
Energy contribution -16.86
Covariance contribution -0.08
Combinations/Pair 1.21
Mean z-score -1.36
Structure conservation index 0.87
SVM decision value 0.05
SVM RNA-class probability 0.560430
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7963193 91 + 27905053
AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUUAAAACGACAAACGCAGAAUUCCGCCCGUAAAAGGGUGGCGAACGUGGUCGGCAGCAA
............((((.((((((.(((.....)))...))))...(((......((((((......)))))).....))))).)))).... ( -20.70)
>DroSec_CAF1 29417 91 + 1
AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUUAAAACGACAAACGCAGAAUGCCGCCCGAAAAAGGGUGGCGAACGUGGUCGGCAGCAA
............((((.((((((.(((.....)))...))))...(((....((((((((......))))))))...))))).)))).... ( -25.20)
>DroSim_CAF1 29750 91 + 1
AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUUAAAACGACAAACGCAGAAUACCGCCCGAAAAAGGGUGGCGAACGUGGUCGGCAGCAA
............((((.((((((.(((.....)))...))))...(((......((((((......)))))).....))))).)))).... ( -20.70)
>DroEre_CAF1 31791 90 + 1
AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUAAAAACGACAAACGCAGAAUUCCACUUGAA-AAGGGUGGCGAACGUGGUCGGCAGCAA
............((((...(((..(((....)))..)))(((..(((.......((((((...-..))))))....))).))))))).... ( -15.60)
>DroYak_CAF1 30310 91 + 1
AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUAAAAACGACAAACGCAGAAUUCCACUCGAAAAAGGGUGGCGAACGUGGUCGGCAGCAA
............((((...(((..(((....)))..)))(((..(((.......((((((......))))))....))).))))))).... ( -18.20)
>DroAna_CAF1 37509 85 + 1
AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUAAAAACGACAAAAGCAGAAUUCCAUCCGAAAACGGGUGGCAAACGUGGCCGG------
.............((((.((((..(((....)))..))))..............(((((((....)))))))......))))...------ ( -16.30)
>consensus
AAUUAACUUAAAUGUCAACGUUGGUAAAAUUUUAAAAACGACAAACGCAGAAUUCCACCCGAAAAAGGGUGGCGAACGUGGUCGGCAGCAA
............((((.((((((...............))))...(((......((((((......)))))).....))))).)))).... (-16.94 = -16.86 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:20 2006