| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,133,299 – 1,133,396 |
| Length | 97 |
| Max. P | 0.713534 |
| Location | 1,133,299 – 1,133,396 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 73.49 |
| Mean single sequence MFE | -14.83 |
| Consensus MFE | -9.09 |
| Energy contribution | -10.34 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.713534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1133299 97 + 27905053 ACUUGCUUUACGUAAAUUAAGAUAAGAACCGUCUUAUCA-----------AAAACAAAAAAGAAAUAUAACGAACAGCCAAUAAACAAAGCAUCGAACAAAGCGGGAA- .((((((((...........(((((((....))))))).-----------....................(((...((...........)).)))...))))))))..- ( -16.40) >DroEre_CAF1 67694 88 + 1 ACUUGCUCUGCGUAAAUUAAGAUAAGAACUGCGUUAUCAU----G-------GGGAAAAA---------ACGAGCAGUAAAUAAACAAGGAAUCGAACAAAGAGAGAA- .....((((.((...............(((((........----.-------........---------....)))))...............)).....))))....- ( -8.81) >DroYak_CAF1 89331 89 + 1 ACUUGCUUUACGUAAAUUAAGAUAAGAGCCGCGUUAUCAU----G-------AGGAAAAA--------CACGAGCAGCCAAUAAACAAGGCAUCGAACAAAGCGGGAA- .((((((((..................((((.(((.((..----.-------..))..))--------).)).)).(((.........))).......))))))))..- ( -17.50) >DroAna_CAF1 64180 95 + 1 ACUUGCUUUACGUAAAUUAAGAUAAGA-CCACCUUAUCACACUCGGUCUG--GGGAAAAA-------AAACAAACACUAAAUAAACAAAA----GAACAAAGCGAGACU .((((((((...........((((((.-....))))))...(((......--))).....-------.......................----....))))))))... ( -16.60) >consensus ACUUGCUUUACGUAAAUUAAGAUAAGAACCGCCUUAUCAU____G_______AGGAAAAA________AACGAACAGCAAAUAAACAAAGCAUCGAACAAAGCGAGAA_ .((((((((...........((((((......))))))................................(((...................)))...))))))))... ( -9.09 = -10.34 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:47 2006