Locus 2979

Sequence ID 3R_DroMel_CAF1
Location 7,958,954 – 7,959,051
Length 97
Max. P 0.594896
window4796

overview

Window 6

Location 7,958,954 – 7,959,051
Length 97
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.56
Mean single sequence MFE -23.57
Consensus MFE -16.73
Energy contribution -17.07
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.18
Structure conservation index 0.71
SVM decision value 0.12
SVM RNA-class probability 0.594896
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7958954 97 - 27905053
CGGGGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACUGCUGCCAAAAAGUGCACAGUAAGUUAAUUUGGCC--------AAG-AA
(..((((((((((((((....))))))((((((...)))))))))).........((((.((((.....).)))))))..........))))--------..)-.. ( -26.60)
>DroPse_CAF1 36045 75 - 1
CGUCGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAGAAGGUACCC-------------------------------
((((((.....((((((....))))))))))))..(((((.((((((.(.........).))))))..)))))..------------------------------- ( -22.60)
>DroSec_CAF1 25290 92 - 1
CGGGGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAAAAAGUGCACAGUAAGUUAAUUUGGAU--------------
...(((((...((((((....))))))..((((((((.......))))))))....))))).(((((....((.......))...)))))..-------------- ( -20.70)
>DroEre_CAF1 26400 97 - 1
CGGGGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAAAAAGUGCACAGUAAGAUAAUUUGGCC--------UAG-AA
..(((((((((((((((....))))))((((((...))))))))))(((.((((....(((.......))).....))))))).....))))--------)..-.. ( -24.10)
>DroYak_CAF1 25977 106 - 1
CGGGGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAAAAAGUGCACAGUACGAUAAUUUCGAGAUCAUUUUAAGAAA
(((.....)))((((((...(((((((((((((...))))))(((((.(.........).))))).)))))))......(((.....)))....))))))...... ( -24.80)
>DroPer_CAF1 32949 75 - 1
CGUCGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAGAAGGUACCC-------------------------------
((((((.....((((((....))))))))))))..(((((.((((((.(.........).))))))..)))))..------------------------------- ( -22.60)
>consensus
CGGGGCUGCCGAAAAUGUUAGCAUUUUGCGAUGAUGUAUCGCUGGCAUCAUUAUAACAGCUGCCAAAAAGUGCACAGUAAG_UAAUUUGG________________
...(((.((.(((((((....))))))..((((((((.......))))))))....).)).))).......................................... (-16.73 = -17.07 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:19 2006