| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,947,552 – 7,947,650 |
| Length | 98 |
| Max. P | 0.886814 |
| Location | 7,947,552 – 7,947,650 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.51 |
| Mean single sequence MFE | -27.67 |
| Consensus MFE | -19.80 |
| Energy contribution | -19.83 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.886814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7947552 98 + 27905053 UACAGCUCCUCGAAGUUGCUGCCACUGGUGCGGCCUAGGACAUAGCUGGUGGCAUAACUACGAAAGGACAAACA--AAAUAUUUAUUAGUAUUUUUUUAA--- ....(.((((((.(((((.((((((..((...((....).)...))..))))))))))).)))..))))....(--(((((((....)))))))).....--- ( -28.60) >DroSec_CAF1 13958 101 + 1 UACAGCUCCUCGAAGUUGCUGCCACUGGUGCGGCCUAGCACAUAGCUGGUGGCAUAACUAGAAAGGGACAAACA--AAAUAUGUAUUAGUAUUAAAUAAAAAC ....(..(((...((((((..((((((((((......)))).))).)))..)))..)))....)))..).....--.(((((......))))).......... ( -25.40) >DroSim_CAF1 14068 101 + 1 UACAGCUCCUCGAAGUUGCUGCCACUGGUGCGGCCUAGGACAUAGCUGGUGGCAUAACUAUAAAAGGACAAACA--AAAUAUGUAUUAGUAUUAAAUAAAAAG ....(.((((...(((((.((((((..((...((....).)...))..))))))))))).....))))).....--.(((((......))))).......... ( -24.00) >DroEre_CAF1 15132 99 + 1 UACAGCUCCUCGAAGUUGCUGCCACUGGUGCGGCCUAGGACGUAGCUGGUGGCAUAGCUAGAGUGGGA-AAACA--AAGUAUUCAUUAGUGUUUCAUAGAAG- .....((((((..(((((.((((((..(((((.(....).)))).)..))))))))))).))).))).-.....--..........................- ( -29.40) >DroYak_CAF1 14575 95 + 1 UACAGCUCCUCGAAGUUGCUGCCACUGGUGCGGCCAAGGACGUAGCUGGUGGCAUAACUAGAGUGGGA-AAAUA--A-----UAAUUAGAUUUGUAUAGAAUG .....((((((..(((((.((((((..(((((.(....).)))).)..))))))))))).))).))).-.....--.-----..................... ( -29.40) >DroAna_CAF1 21762 97 + 1 UAGAGAUCCUCGAAGCUGCUGCCGCUGGUGCGUCCAAGGACGUAGCUGGUGGCAUAACUGGAGAGAUAAAAACAUUAAAUAUUUAGAAUAGUUAUAU------ .....((((((..((.((.((((((..(((((((....)))))).)..)))))))).)).))).)))..............................------ ( -29.20) >consensus UACAGCUCCUCGAAGUUGCUGCCACUGGUGCGGCCUAGGACAUAGCUGGUGGCAUAACUAGAAAGGGACAAACA__AAAUAUUUAUUAGUAUUAUAUAAAA__ ......((((...(((((.((((((..((..(........)...))..))))))))))).....))))................................... (-19.80 = -19.83 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:14 2006