Locus 2975

Sequence ID 3R_DroMel_CAF1
Location 7,945,895 – 7,945,992
Length 97
Max. P 0.713580
window4790

overview

Window 0

Location 7,945,895 – 7,945,992
Length 97
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 88.87
Mean single sequence MFE -40.01
Consensus MFE -34.61
Energy contribution -34.98
Covariance contribution 0.37
Combinations/Pair 1.04
Mean z-score -1.55
Structure conservation index 0.87
SVM decision value 0.38
SVM RNA-class probability 0.713580
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7945895 97 - 27905053
UAUCUGCAGGAGCUGCAUGAGCUGCAGGAGCGGCCGAAGGAGCCUGCUGCCAGUAAUUAAAGGCGCUUUUGGCCCAACUUGCAGCCGACAACUGGCA------------
..(((((((...))))).))((((((((...(((((((((.((((...............)))).)))))))))...))))))))............------------ ( -39.76)
>DroSec_CAF1 12268 109 - 1
UAUCUGCAGGAGCCGCAUGAGCUGCAGGAGCGGCCGAAGGAGCCUGCUGCCAGUAAUUAAAGGCGCUUUUGGCCCAACUUGCAGCCGACAACUGGGAAAGGGGAAACGG
..(((.(((..(.((.....((((((((...(((((((((.((((...............)))).)))))))))...)))))))))).)..))))))....(....).. ( -40.26)
>DroSim_CAF1 12383 109 - 1
UAUCUGCAGGAGCCGCAUGAGCUGCAGGAGCGGCCGAAGGAGCCUGCUGCCAGUAAUUAAAGGCGCUUUUGGCCCAACUUGCAGCCGACAACUGGCAACGGGCAGCCGG
...((((.(..((((..((.((((((((...(((((((((.((((...............)))).)))))))))...))))))))...))..))))..)..)))).... ( -45.86)
>DroYak_CAF1 12896 102 - 1
UAUCUGCAGGAGCAGCAGGAGCAGCAUGAGCGGCCGAAGGAGCCUGCUGCCAGUAAUUAAAGGCGCUUUUGGCCCAACUCGCAGCCGACAACUGGUAACUGG-------
...((((....))))(((..((.((....))(((((((((.((((...............)))).)))))))))......)).((((.....))))..))).------- ( -34.16)
>consensus
UAUCUGCAGGAGCCGCAUGAGCUGCAGGAGCGGCCGAAGGAGCCUGCUGCCAGUAAUUAAAGGCGCUUUUGGCCCAACUUGCAGCCGACAACUGGCAACGGG_______
....((((((.((.((....)).))....(.(((((((((.((((...............)))).))))))))))..))))))((((.....))))............. (-34.61 = -34.98 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:13 2006