Locus 2974

Sequence ID 3R_DroMel_CAF1
Location 7,932,152 – 7,932,267
Length 115
Max. P 0.528538
window4789

overview

Window 9

Location 7,932,152 – 7,932,267
Length 115
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 92.44
Mean single sequence MFE -19.38
Consensus MFE -13.33
Energy contribution -14.00
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -3.07
Structure conservation index 0.69
SVM decision value -0.01
SVM RNA-class probability 0.528538
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7932152 115 + 27905053
AAAAGUAAAAAAAAAAAUUAAAAGCUAAAAGGAAACAGAGAGCCAAAUGAAAUAAAAGCCACCACAGGCGGUGACAUUAAGCGGCAAAUUUUUAUGAUUUUAAUUAGCAUAAAAG
.......................(((((..(....).....(((.............(((......)))(....).......)))..................)))))....... ( -19.80)
>DroSec_CAF1 63642 114 + 1
AAAAGUAAAA-AAAAAAUUAAAAGCUAAAAGGAAACAGAGAGCCAAAUGAAAUAAAAGCCACCACAGGCGGUGACAUUAAGCGGCAAAUUUUUAUGAUUUUAAUUAGCAUAAAAG
..........-............(((((..(....).....(((.............(((......)))(....).......)))..................)))))....... ( -19.80)
>DroEre_CAF1 64631 107 + 1
AAAA--------AAAAAUUAAAAGCUAAGAGGAAACUGAGAACCAAAUGAAAUAAAAACCGCCACAGGCGGUGACAUUAAGCGGCAAAUUUUUAUGAUUUUAAUUAGCAUAAAAG
....--------...........(((((..((((.(((((((.....((........((((((...)))))).........)).....)))))).).))))..)))))....... ( -18.53)
>consensus
AAAAGUAAAA_AAAAAAUUAAAAGCUAAAAGGAAACAGAGAGCCAAAUGAAAUAAAAGCCACCACAGGCGGUGACAUUAAGCGGCAAAUUUUUAUGAUUUUAAUUAGCAUAAAAG
.......................(((((..(....).....(((.((((..((....(((......))).))..))))....)))..................)))))....... (-13.33 = -14.00 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:49:13 2006