| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,129,388 – 1,129,494 |
| Length | 106 |
| Max. P | 0.936170 |
| Location | 1,129,388 – 1,129,494 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 88.17 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -21.70 |
| Energy contribution | -22.70 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.30 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.936170 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1129388 106 - 27905053 UUAAAUUAUUUUUGCGGUCUGUAAAUAAGCCGGGCAAA-------AAACUAAAUCUAAAUCGAAAUCGAAAACGGCAGGCCGCAAAUAUUGAUAAUUUAUAAGGCGAGAGCGA .(((((((((((((((((((((......((...))...-------..............(((....))).....))))))))))))....)))))))))....((....)).. ( -29.40) >DroSec_CAF1 63292 112 - 1 GUAAAUUAUGUUUGCGGUCUGUAAAUAAGCCUGGCAAA-AACCUAAAACUAAAACUAAAUCCAAAACGAAAACGGCAGGCCGCAAAUAUUGAUAAUUUAUAAGGCGAGAUCGG ((((((((((((((((((((((..........((....-..)).......................((....)))))))))))))))....)))))))))....((....)). ( -25.90) >DroSim_CAF1 63900 113 - 1 GUAAAUUAUGUUUGCGGUCUGUAAAUUUGCCUGACAAAAAAACCAAAACUAAAUCUAAAUCGAAAACGAAAACGGCAGGCCGCAAAUAUUGAUAAUUUAUAAGCCGAGAGCGG ((((((((((((((((((((((...((((.....)))).....................(((....))).....)))))))))))))....)))))))))...(((....))) ( -28.10) >consensus GUAAAUUAUGUUUGCGGUCUGUAAAUAAGCCUGGCAAA_AA_C_AAAACUAAAUCUAAAUCGAAAACGAAAACGGCAGGCCGCAAAUAUUGAUAAUUUAUAAGGCGAGAGCGG ((((((((((((((((((((((......(.....)........................(((....))).....)))))))))))))....)))))))))............. (-21.70 = -22.70 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:46 2006