| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,925,170 – 7,925,278 |
| Length | 108 |
| Max. P | 0.530112 |
| Location | 7,925,170 – 7,925,278 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 87.42 |
| Mean single sequence MFE | -33.09 |
| Consensus MFE | -23.41 |
| Energy contribution | -24.27 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.17 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7925170 108 + 27905053 AAUCAAAGCGGCCUACAGGUUGACUUGGGCCGACCUUUCCUUCCUGAUCGCC--CCCGUCUUCUCACUAUUACACCUAGCCAAAUGGCCAGAAUCCUUUAAGGCU--GCUAU- ......((((((((..(((..(((..((((.((.(..........).)))))--)..)))...............((.(((....))).))...)))...)))))--)))..- ( -31.20) >DroSec_CAF1 56391 108 + 1 AAUCAAAGCGGCCUACAGGUUGACUUGGGCCGACCUUUCCUUCCUGAUCGCC--CCCGUCUUCUCACUGUUACACCUGGCCAAACGGCCAGAAUCCUUUAAGGCU--GCUCU- ......(((((((((((((..(((..((((.((.(..........).)))))--)..)))....).)))).....((((((....)))))).........)))))--)))..- ( -37.80) >DroSim_CAF1 58185 108 + 1 AAUCAAAGCGGCCUACAGGUUGACUUGGGCCGACCUUUCCUUCCUGAUCGCC--UCCGUCUUCUCACUAUUACACCUGGCCAAAUGGCCAGAAUCCUUUAAGGCU--GCUCU- ......((((((((..(((..(((..((((.((.(..........).)))))--)..)))...............((((((....))))))...)))...)))))--)))..- ( -35.50) >DroEre_CAF1 57128 110 + 1 AAUCAAAGCGGCCUACAGGUUGACUUGGGACGACCUUUCCUUCCUGAUCGCCGCCCUGUCUUCUCGCUAUUACACCUGGCCAAAUGGCCAGAAUCCUUUAAGGCU--GCUCU- ......((((((((..(((..(((..(((.(((.(..........).)))...))).)))...............((((((....))))))...)))...)))))--)))..- ( -36.10) >DroYak_CAF1 57836 108 + 1 AAUCAAAGCGGCCUACAGGUUGACUUGGGACGACCUUUCCUUCCUGAUCGCC--CCUGUCUUCUCGCUAUUACACCUGGCCAAAUGGCCAGAAUCCUUUAAGGCU--GCUCU- ......((((((((..(((..(((..(((.(((.(..........).)))))--)..)))...............((((((....))))))...)))...)))))--)))..- ( -38.00) >DroAna_CAF1 52849 96 + 1 AAUCAAAGCGGCCUACAGAUUGACUUGGCCUGACCUCUCACAC-----------CCCGACU------CAUUACACCUGGCCAAAUGACCGGAAUCCUUUAAGGCUCAGCUCAG ......(((((((.......(((.((((..((........)).-----------.)))).)------))........))))...(((((..((....))..)).))))))... ( -19.96) >consensus AAUCAAAGCGGCCUACAGGUUGACUUGGGCCGACCUUUCCUUCCUGAUCGCC__CCCGUCUUCUCACUAUUACACCUGGCCAAAUGGCCAGAAUCCUUUAAGGCU__GCUCU_ ......((((((((.((((.......((.....)).......)))).............................((((((....)))))).........)))))..)))... (-23.41 = -24.27 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:51 2006