Locus 2961

Sequence ID 3R_DroMel_CAF1
Location 7,913,150 – 7,913,256
Length 106
Max. P 0.660169
window4762

overview

Window 2

Location 7,913,150 – 7,913,256
Length 106
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 83.47
Mean single sequence MFE -31.12
Consensus MFE -27.22
Energy contribution -27.26
Covariance contribution 0.04
Combinations/Pair 1.15
Mean z-score -1.56
Structure conservation index 0.87
SVM decision value 0.27
SVM RNA-class probability 0.660169
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7913150 106 + 27905053
UUGGCCCAAAUAUCAUGAGCGAUGGAAUCUUUUAUUUAGAUCCAUGGUCAUGUGCGGCAAAUAUUUUGCGCUGUUUUCGGGUUGCCA-----GGUAAACCUGGGUCAGUGA
..(((((......(((((.(.(((((.(((.......)))))))).)))))).(((.(((.....)))))).......))))).(((-----((....)))))........ ( -33.70)
>DroSec_CAF1 44358 106 + 1
UUGGGCCAAAUAUCAUGAGCGAUGGAAUUUUUUAUUUAGAUCCAUGGUCGUGUGCGGCAAAUAUUUUGCGCUGUUUUCAGGUUGCCA-----GGUAAACCUGGGUCAGUGA
....(((......(((((.(.(((((.(((.......)))))))).))))))...)))..........(((((..((((((((....-----....)))))))).))))). ( -30.70)
>DroSim_CAF1 46132 106 + 1
UUGGGCCAAAUAUCAUGAGCGAUGGAAUUUUUUAUUUAGAUCCAUGGUCGUGUGCGGCAAAUAUUUUGCGCUGUUUUCAGGUUGCCA-----GGUAAACCUGGGUCAGUGA
....(((......(((((.(.(((((.(((.......)))))))).))))))...)))..........(((((..((((((((....-----....)))))))).))))). ( -30.70)
>DroEre_CAF1 44888 96 + 1
---------------UGACCGAUGGCAUUUUUUAUUGAGAUCCGUGGUCAGGGGCGGCAAAUAUUUUGCGCUGUUUUCAGGUUGCCAGGUCAGGUAAAGCUGGGCCAGUGA
---------------(((((.((((.(((((.....))))))))))))))..((((((((.....)))).(((....)))..)))).((((.((.....)).))))..... ( -29.70)
>DroYak_CAF1 45342 91 + 1
---------------UGACCGACGGCAUUUUUUAUUGAGAUCCGUGGUCAUGGGCGGCAAAUAUUUUGCGCUGUUUUCAGGUUGCCC-----GGUAAACCUGGGUCAGUGA
---------------(((((.((((.(((((.....))))))))))))))......((((.....))))((((..((((((((....-----....)))))))).)))).. ( -30.80)
>consensus
UUGG_CCAAAUAUCAUGAGCGAUGGAAUUUUUUAUUUAGAUCCAUGGUCAUGUGCGGCAAAUAUUUUGCGCUGUUUUCAGGUUGCCA_____GGUAAACCUGGGUCAGUGA
.............(((((.(.((((.((((.......)))))))).))))))....((((.....))))((((..(((((((((((......))).)))))))).)))).. (-27.22 = -27.26 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:46 2006