| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,911,640 – 7,911,758 |
| Length | 118 |
| Max. P | 0.972257 |
| Location | 7,911,640 – 7,911,758 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.68 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -17.92 |
| Energy contribution | -19.27 |
| Covariance contribution | 1.35 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.972257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7911640 118 + 27905053 AACGGGCCUCCUCU-AGUUUUCCCGCACAGCUCUCCU-UUGAAUUCCUCCUCAGACUUGUUGAACCAAACGCCACAAUGAGACAUUUCAUGUGGCAACAUCUGCCCGUCGAUUUCCCAAA .((((((.......-............((((.....(-((((........)))))...))))........((((((.((((....)))))))))).......))))))............ ( -27.70) >DroSec_CAF1 42915 100 + 1 AACGGGCCUCUG--------------------GCCCGCUGGAAAUCCUCCUCAGACUUGUUGAACCAAACGCCGCAAUGAGAUAUUUCAUGUGGCAACAUCUGUCCGUCGAUUUCCCAAA ..((((((...)--------------------)))))..(((((((..(..((((...(((......)))((((((.((((....))))))))))....))))...)..))))))).... ( -36.10) >DroSim_CAF1 44669 120 + 1 AACGGGCCUCUUCCAAGUUUUCCCGCACAGCUCCCCGCUGGAAAUCCUCCUCAGACUUGUUGAACCAAACGCCGCAAUGAGACAUUUCAUGUGGCAACAUCUGUCCGUCGAUUUCCCAAA ..((((...((....))....))))..((((.....))))((((((..(..((((...(((......)))((((((.((((....))))))))))....))))...)..))))))..... ( -31.80) >DroEre_CAF1 43457 118 + 1 AAUGGGCAGGUUCC-CGUUUACCCGCACAGCUCCCU-UUGGAAAUCCUCCCCAGACUUGUUGAACCAAACGCCGCAAUGAGACAUUUCAUGUGGCAACAUCUGUCCGUCGAUUUCCCGAA ..(((((((((...-............((((....(-((((.........)))))...))))........((((((.((((....))))))))))...)))))))))(((......))). ( -31.20) >DroYak_CAF1 43914 118 + 1 AAUGAGCAGGUUCC-CGUUUUACCGCACAGCUCCCU-UUGGAAAUCCUCCUCAGACUUGUUGAACCAAACGCCGCAAUGAGACAUUUCAUGUGGCAACAUCUGUCUGUCGAUUUCCCGAA ...((((.(((...-......))).....))))...-..(((((((.....(((((..(((......)))((((((.((((....)))))))))).......)))))..))))))).... ( -32.50) >DroPer_CAF1 44248 89 + 1 AAACUGUCAGUUC-------UUGAG-----------------------CACCAGACUUGUUGAACCUCACAUCGCAGUGAGACAUUCCGUGCGAGAACAUCUGUCCCUCGAUU-CCCAAA .........((((-------((..(-----------------------(((..((..(((.....(((((......)))))))).)).))))))))))...............-...... ( -17.30) >consensus AACGGGCCUCUUCC__GUUUUCCCGCACAGCUCCCC__UGGAAAUCCUCCUCAGACUUGUUGAACCAAACGCCGCAAUGAGACAUUUCAUGUGGCAACAUCUGUCCGUCGAUUUCCCAAA .......................................(((((((..(..((((...(((......)))((((((.((((....))))))))))....))))...)..))))))).... (-17.92 = -19.27 + 1.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:45 2006