| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,910,465 – 7,910,578 |
| Length | 113 |
| Max. P | 0.874243 |
| Location | 7,910,465 – 7,910,578 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 70.85 |
| Mean single sequence MFE | -23.18 |
| Consensus MFE | -9.04 |
| Energy contribution | -10.58 |
| Covariance contribution | 1.54 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.874243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7910465 113 + 27905053 AAAUUUGUCUUUGGAAUUUCAUGGCUGUCAGUUUUUCGAUCAGAUAAUCUG-UAUCUAAAACCAAAUCCAUCACUUUGGAAUAAUUAAUAAGACAGCUCAUGGAAGAUAAG---CUC ...(((((((.......((((((((((((.(((((..((((((.....)))-.))).)))))....((((......))))...........)))))).)))))))))))))---... ( -30.51) >DroSec_CAF1 41682 93 + 1 --------ACUUGGAAUUUCACG------------ACGAUCUGAUAGUCUG-UAUCUAAAACCAAAUCCAUCACUUUGGAAUAAUUAAUAAGACAGACCCGGCAAGAUAAG---CUC --------.((((.....(((.(------------.....))))..(((((-(.............((((......))))............))))))....)))).....---... ( -14.41) >DroSim_CAF1 43413 111 + 1 -AAUUUGUCUUUGGAAUUUCACGGCUGUCAGUUUUACGAUCUGAUAGUCUG-UAUC-AAAACCAAAUCCAUCACUUUGGAAUAAUUAAUAAGACAGCCCAGGCAAGAUAAG---CUC -....(((((((((......(((((((((((.........))))))).)))-)...-....)))).((((......))))..........)))))((....))........---... ( -25.62) >DroEre_CAF1 42242 95 + 1 -AAUGU-UUUCUGGAAUUUUUAGGCUGU--------------------CUGUUAUCUUAAACCAAGCCCAUUACUUUGGAAUUAAUAAGAAAACAGCUCAUGCUAGAGAAGCAGCUU -.....-..............(((((((--------------------(((((.(((((....((..(((......)))..))..))))).)))))(((......)))..))))))) ( -19.50) >DroYak_CAF1 42665 103 + 1 -AAUGU----CUGGAAUUUCACGGCUGUCAGUUUAACGAUCUGAUAGUCUGUUAUCUAAAAGAAAAUCCAUCACUUUGGAUUGAUUAAUAAGACAGCCCAUGCAAGAU--------- -..(((----.(((........(((((((((.........))))))))).(((.(((.......((((((......))))))........))).)))))).)))....--------- ( -25.86) >consensus _AAUGU_UCUUUGGAAUUUCACGGCUGUCAGUUU_ACGAUCUGAUAGUCUG_UAUCUAAAACCAAAUCCAUCACUUUGGAAUAAUUAAUAAGACAGCCCAUGCAAGAUAAG___CUC ......................(((((((........(((......))).................((((......))))...........)))))))................... ( -9.04 = -10.58 + 1.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:44 2006