Locus 2958

Sequence ID 3R_DroMel_CAF1
Location 7,908,734 – 7,908,826
Length 92
Max. P 0.581796
window4759

overview

Window 9

Location 7,908,734 – 7,908,826
Length 92
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.01
Mean single sequence MFE -27.09
Consensus MFE -17.53
Energy contribution -18.24
Covariance contribution 0.71
Combinations/Pair 1.06
Mean z-score -1.72
Structure conservation index 0.65
SVM decision value 0.10
SVM RNA-class probability 0.581796
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7908734 92 - 27905053
AACUUU------UCCUCCAGCUGGGCACCAGACAAUCCUUUCCCAUAUCCAACCGUGAAUAGUGGCCAAU------GGAUCGACCUUCUGGGUCACCAGCUGAC
......------.....(((((((...((((((.((((....((((((.((....)).)).)))).....------)))).)....)))))....))))))).. ( -26.10)
>DroSec_CAF1 40018 86 - 1
------------CCGACCAGCUGGGCGCCAGACAAUCCUUUCCCACAUCCAGCCGUGAAUAGUGGCCAAU------GGAUCGACCUUCUGGGUCACCAGCUGAC
------------.....(((((((......................(((((((((.......))))...)------)))).((((.....)))).))))))).. ( -27.50)
>DroSim_CAF1 41748 92 - 1
AACUUU------UCCUCCAGCUGGGCGCCAGACAAUCCUUUCCCACAUCCAGCCGUGAAUAGUGGCCAAU------GGAUCGACCUUCUGGGUCACCAGCUGAC
......------.....(((((((......................(((((((((.......))))...)------)))).((((.....)))).))))))).. ( -27.50)
>DroEre_CAF1 40573 98 - 1
AACUUUUCCUUUUCCUCCAGCUGGGCGGCGGACAAUCCUUUCCCACAUCCAACCGUGAAUAGUGACCAAU------GGAUCGACCUUCUGGGUCACCAGCUGAC
.................(((((((((((.(((...............)))..))))......(((((...------(((.......))).)))))))))))).. ( -26.66)
>DroYak_CAF1 40839 92 - 1
AACUUU------UGCUCCAGCUGGGCGGCGGACAAUCCUUUCCCACAUCCAACCGUGAAUAGUGACCAAU------GGAUCGACCUUCUGGGUCACCAGCUGAC
......------.....(((((((((((.(((...............)))..))))......(((((...------(((.......))).)))))))))))).. ( -26.66)
>DroAna_CAF1 36244 88 - 1
AACUUU------CCUUCCAGCUGGGCGACCGGCAAUCCUUUCCCACAUCCAG----------GGCCCCACUGAUUGGGUCCGACCUUCUGCGGCACCAGCUGAC
......------.....(((((((((....((.((....)).)).......(----------(((((........))))))...........)).))))))).. ( -28.10)
>consensus
AACUUU______UCCUCCAGCUGGGCGCCAGACAAUCCUUUCCCACAUCCAACCGUGAAUAGUGGCCAAU______GGAUCGACCUUCUGGGUCACCAGCUGAC
.................(((((((..........((((.............((........)).............)))).((((.....)))).))))))).. (-17.53 = -18.24 +   0.71)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:43 2006