Locus 2956

Sequence ID 3R_DroMel_CAF1
Location 7,903,687 – 7,903,807
Length 120
Max. P 0.637673
window4754

overview

Window 4

Location 7,903,687 – 7,903,807
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.39
Mean single sequence MFE -20.97
Consensus MFE -20.79
Energy contribution -20.90
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.48
Structure conservation index 0.99
SVM decision value 0.22
SVM RNA-class probability 0.637673
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7903687 120 + 27905053
UUCUAUCGAUUUUUCUUAAACAUAAACACAGUUUACCCUUUAAGCCCACAAUUUAUAUCAAUAAAAUUUUUGAUUGGCUUCCAAAAAGCAUUGUAGGUUGUCCUAAACUGGCUGAUGCCC
...((((((....)).............(((((((.......((((.(((((....(((((........)))))..((((.....))))))))).))))....)))))))...))))... ( -19.40)
>DroSec_CAF1 35076 120 + 1
UUCUAUCGAUUUUUCUAAAACAUAAAUACAGUUUACCCUUUAAGUCUACAAUUUAUAUCAAUAAAAAUUUUGAUUGGCUUCCAAAAAGCAUUGUAGGUUGUUCUAAACUGGCUGAUGCCC
...((((((....)).............(((((((.......(..(((((((....(((((........)))))..((((.....)))))))))))..)....)))))))...))))... ( -19.60)
>DroSim_CAF1 36852 120 + 1
UUCUAUCGAUUUUUCUAAAACAUAAAUACAGUUUACCCUUUAAGCCUACAAUUUAUAUCAAUAAAAGUUUUGAUUGGCUUCCAAAAAGCAUUGUAGGUUGUUCUAAACUGGCUGAUGCCC
...((((((....)).............(((((((.......((((((((((....(((((........)))))..((((.....))))))))))))))....)))))))...))))... ( -23.90)
>consensus
UUCUAUCGAUUUUUCUAAAACAUAAAUACAGUUUACCCUUUAAGCCUACAAUUUAUAUCAAUAAAAAUUUUGAUUGGCUUCCAAAAAGCAUUGUAGGUUGUUCUAAACUGGCUGAUGCCC
...((((((....)).............(((((((.......((((((((((....(((((........)))))..((((.....))))))))))))))....)))))))...))))... (-20.79 = -20.90 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:39 2006