Locus 2953

Sequence ID 3R_DroMel_CAF1
Location 7,896,866 – 7,896,961
Length 95
Max. P 0.505800
window4750

overview

Window 0

Location 7,896,866 – 7,896,961
Length 95
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 77.32
Mean single sequence MFE -26.25
Consensus MFE -17.14
Energy contribution -17.20
Covariance contribution 0.06
Combinations/Pair 1.18
Mean z-score -1.15
Structure conservation index 0.65
SVM decision value -0.05
SVM RNA-class probability 0.505800
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7896866 95 + 27905053
UAUU-UGUUAU---GGCA--U--CACCCAACCUUUAAUCAUGGACACAUCGUUGGCACCAUCGCCAAUGGCCAGAGUGACUGCGUUUUUGGCACGCUUUAUUA
....-......---(((.--.--.......((.........))......(((((((......))))))))))((((((..(((.......))))))))).... ( -22.30)
>DroVir_CAF1 18114 99 + 1
CUUU-CGUUUGAAGUGUG--UAGGA-CUCACCCUUGAUCAUGGAAACAUCGUUGGCGCCAUCCCCAAUGGCCAGUGUGACGGCAUUUUUGGCACGCUUGAUUA
....-....(.(((((((--(....-.((((.((..((.(((....))).))..).(((((.....)))))..).))))...((....)))))))))).)... ( -23.90)
>DroGri_CAF1 13793 89 + 1
U--G-CGC--------CG--UGAUG-CUUACCCUUGAUCAUGGAGACAUCGUUGGCGCCAUCGCCAAUGGCCAGAGUGACGGCAUUUUUGGCACGCUUGAUUA
.--(-(((--------((--((((.-(........))))))))......((((((((....))))))))(((((((((....)).))))))).)))....... ( -30.50)
>DroEre_CAF1 28719 94 + 1
UAUU-UGUCUU---GGCA--U--CA-CUCACCUUUUAUCAUGGACACAUCGUUGGCGCCAUCGCCAAUGGCCAGAGUUACGGCGUUUUUGGCACGCUUUAUUA
....-..(((.---(((.--.--..-....((.........))......((((((((....)))))))))))))).....(((((.......)))))...... ( -23.00)
>DroMoj_CAF1 173525 95 + 1
UAUG-UGUAUG---GGUG--U-GGA-CUCACCCUUGAUCAUGGAGACAUCGUUGGCACCGUCGCCAAUGGCCAGGGUGACAGCAUUUUUGGCACGCUUAAUGA
...(-(((..(---((((--(-...-.(((((((.(...(((....)))(((((((......))))))).).)))))))..))))))...))))......... ( -34.20)
>DroAna_CAF1 24935 98 + 1
UAGUUUGCUUU---UAUUUGU-CUA-CUUACCCUUGAUCAUAGACACAUCAUUGGCUCCAUCGCCAAUGGCCAAGGUAACAGCAUUUUUGGCACGUUUGAUUA
.(((..((...---.....))-..)-))......((((((..(((....(((((((......)))))))(((((((.........)))))))..))))))))) ( -23.60)
>consensus
UAUU_UGUUUU___GGCG__U__CA_CUCACCCUUGAUCAUGGACACAUCGUUGGCGCCAUCGCCAAUGGCCAGAGUGACGGCAUUUUUGGCACGCUUGAUUA
.......................................(((....)))(((((((......)))))))(((((((.........)))))))........... (-17.14 = -17.20 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:35 2006