Locus 2952

Sequence ID 3R_DroMel_CAF1
Location 7,892,308 – 7,892,413
Length 105
Max. P 0.940357
window4749

overview

Window 9

Location 7,892,308 – 7,892,413
Length 105
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 88.24
Mean single sequence MFE -42.14
Consensus MFE -29.82
Energy contribution -32.99
Covariance contribution 3.17
Combinations/Pair 1.05
Mean z-score -2.93
Structure conservation index 0.71
SVM decision value 1.31
SVM RNA-class probability 0.940357
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7892308 105 - 27905053
ACGAGUGCCAGAGGGUUUAAAGUGGGUGAAAGUGGGCGAAAGUGGGACGAUGUGGGCUGAAGCUCAUGUGUGUUGUGUUAACUGCUUCUCCC----------AUUUCCUUCUGGG
.......((((((((....(((((((.(((.(..(((....))(.((((((((((((....)))))))).)))).).....)..)))).)))----------)))))))))))). ( -42.00)
>DroSec_CAF1 23794 115 - 1
ACGAGUGCCACAGGGUUUAAAGUGGGUGAAAGUGGGGGAAAGUGGAACGAUGUGGGCGGAAGCUCAUGUGUGUUGUGUUAACUGCUUCUCCCACUUGGUCGCAUUUCCUUCUGGG
.......(((.((((....(((((.(...(((((((((((.(..(.(((((((((((....))))))....))))).....)..))))))))))))...).))))))))).))). ( -44.60)
>DroSim_CAF1 24252 115 - 1
ACGAGUGCCAGAGGGUUUAAAGUGGGUGAAAGUGGGCGAAAGUGGAACGAUGUGGGCGGAAGCUCAUGUGUGUUGUGUUAACUGCUUCUCCCACUUGGUCGCAUUUCCUUCUGGG
.......((((((((....(((((.(...(((((((.(((.(..(.(((((((((((....))))))....))))).....)..)))).)))))))...).))))))))))))). ( -47.20)
>DroEre_CAF1 24124 113 - 1
ACGAGUGCCAGAGGGCUUAAAGUGGGCGAAAGUGGGCGAAAGUGGAACGAUGUGGAUUGGAGCGCAUGUGUGUUGUGUUAACUGCUUC--CCACUUGGUCGCAUUUCCUUCUGGG
.......((((((((....((((((((..(((((((...(((..(..((((....)))).((((((.......))))))..)..))))--)))))).))).))))))))))))). ( -40.40)
>DroYak_CAF1 24308 105 - 1
ACGAGUGCCAGAGGGUUUAAAGUGGGUGAA--------AAAGUGGGUCGAUGUGGGUUGAAGCGCAUGUGUGUUGUGUUAACUGCUUC--CCACUUGGUCGCAUUUCCUUCUGGG
.......((((((((...(((....((((.--------.(((((((.....(..(.....((((((.......))))))..)..)..)--))))))..)))).))))))))))). ( -36.50)
>consensus
ACGAGUGCCAGAGGGUUUAAAGUGGGUGAAAGUGGGCGAAAGUGGAACGAUGUGGGCUGAAGCUCAUGUGUGUUGUGUUAACUGCUUCUCCCACUUGGUCGCAUUUCCUUCUGGG
.......((((((((....(((((.(...(((((((.(((.(..(((((((((((((....)))))))).)))).......)..)))).)))))))...).))))))))))))). (-29.82 = -32.99 +   3.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:34 2006