Locus 2951

Sequence ID 3R_DroMel_CAF1
Location 7,890,557 – 7,890,660
Length 103
Max. P 0.710157
window4748

overview

Window 8

Location 7,890,557 – 7,890,660
Length 103
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.35
Mean single sequence MFE -23.79
Consensus MFE -14.98
Energy contribution -15.12
Covariance contribution 0.14
Combinations/Pair 1.12
Mean z-score -1.97
Structure conservation index 0.63
SVM decision value 0.37
SVM RNA-class probability 0.710157
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7890557 103 + 27905053
ACAAGUUGCAAGCUG----AAAACAUAG------GA-GCGAAAAGGUUGGCAGCAAUUUUGUUGCC-----UUAAUGCAUAAUAGAAAGUGUCGUAUCCAUGACAGCCA-AACUUUAAAA
..(((((....((((----....(((.(------((-((((.......(((((((....)))))))-----......(((........))))))).)))))).))))..-)))))..... ( -24.00)
>DroPse_CAF1 21428 115 + 1
ACAAGUUGUAAGCAC----AACAAAAAAUGGCCAAA-GUAAAAAGGUUGAAAACAAUUUUGUUGCCGUUCCCUAAUGCAUAAUAGAAAGUGUCGUAUCCAUGGCAGCGAAAACUUUAAAA
....(((((....))----))).......((((...-.......))))........((((((((((((........((((........)))).......))))))))))))......... ( -21.56)
>DroEre_CAF1 22394 103 + 1
ACAAGUUGCAAGCUG----AAAACAUAG------GA-GCGAAAAGGUUGGCAACAAUUUGGUUGCC-----UUAAUGCAUAAUAGAAAGUGUCGUAUCCAUGACAGCCA-AACUUUAAAA
..(((((....((((----......(((------(.-((((..((((((....))))))..)))))-----)))((((((........))).)))........))))..-)))))..... ( -23.80)
>DroYak_CAF1 22536 102 + 1
ACAAGUUGCAAGCUG----GAAACAUAG------UA-GCGAA-AGGUUGGCAGCAAUUUGGUUGCC-----UUAAUGCAUAAUAGAAAGUGUCGUAUCCAUGACAGCCA-AACUUUAAAA
....(((((....((----....))..)------))-)).((-((.(((((.(((.(..((...))-----..).)))...........((((((....))))))))))-).)))).... ( -24.80)
>DroAna_CAF1 19065 107 + 1
GCAAGUUGCAAGCAAAGGAAAAAAGUAU------GGGGCG-AAAGGUUGGAAACAAUUUUGUUGCC-----UUAAUGCAUAAUAGAAAGUGUCGCAUCCAUGGCAGCAA-AAGUUUAAAA
....(((((.......(((........(------((((((-((((((((....))))))).)))))-----))).((((((........))).))))))...)))))..-.......... ( -27.00)
>DroPer_CAF1 21097 115 + 1
ACAAGUUGUAAGCAC----AACAAAAAAUGGCCAAA-GUAAAAAGGUUGAAAACAAUUUUGUUGCCGUUCCCUAAUGCAUAAUAGAAAGUGUCGUAUCCAUGGCAGCGAAAACUUUAAAA
....(((((....))----))).......((((...-.......))))........((((((((((((........((((........)))).......))))))))))))......... ( -21.56)
>consensus
ACAAGUUGCAAGCAG____AAAAAAUAG______GA_GCGAAAAGGUUGGAAACAAUUUUGUUGCC_____UUAAUGCAUAAUAGAAAGUGUCGUAUCCAUGACAGCCA_AACUUUAAAA
..(((((....((........................((((.(((((((....))))))).))))........................((((((....))))))))...)))))..... (-14.98 = -15.12 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:33 2006