Locus 2950

Sequence ID 3R_DroMel_CAF1
Location 7,890,355 – 7,890,463
Length 108
Max. P 0.926204
window4747

overview

Window 7

Location 7,890,355 – 7,890,463
Length 108
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 95.94
Mean single sequence MFE -28.80
Consensus MFE -27.16
Energy contribution -27.00
Covariance contribution -0.16
Combinations/Pair 1.03
Mean z-score -1.39
Structure conservation index 0.94
SVM decision value 1.17
SVM RNA-class probability 0.926204
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7890355 108 - 27905053
CAAGAUAGAUACCGUUGCUGACAGCUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUUCUGCUUCCUCGCAAUAUCUGGCCAAAA-CG
.....(((((...(((((.(((((((.(((.((((((((((...)))))))))).))).).))))))......((((....))))....)))))))))).......-.. ( -30.50)
>DroSec_CAF1 21856 108 - 1
CAAGAUAGAUACCGUUGCUGACAACUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUUCUGCUUCCUCGCAAUAUCUGGCCAAAA-CG
.....(((((...(((((.(((((((.(((.((((((((((...)))))))))).))).).))))))......((((....))))....)))))))))).......-.. ( -30.50)
>DroSim_CAF1 22288 108 - 1
CAAGAUAGAUACCGUUUCUGACAGCUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUUCUGCUUCCUCGCAAUAUCUGGCCAAAA-CG
.....((((((..((....(((((((.(((.((((((((((...)))))))))).))).).))))))......((((....))))....))..)))))).......-.. ( -27.00)
>DroEre_CAF1 22190 109 - 1
CAAGAUAGAUACCGUUGCUGACAGCUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUCCUGCUUUUCCGCUAUAUCUGGCCAAAAGCG
.............(..((((((((((.(((.((((((((((...)))))))))).))).).)))))).......)))..).((((((..((((....)))).)))))). ( -29.01)
>DroYak_CAF1 22336 108 - 1
CAAGAUAGAUACCGUUGCUGACAGCUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUUCUGCUUUUCCUCUAUAUCUGGCCAAAA-CG
.....((((((........(((((((.(((.((((((((((...)))))))))).))).).))))))......((((....))))........)))))).......-.. ( -27.00)
>consensus
CAAGAUAGAUACCGUUGCUGACAGCUGCUUAAGUGCGAAAUUCGAUUUCGCAUUCAAGGGCGUUGUCCACUUUAAGCUUCUGCUUCCUCGCAAUAUCUGGCCAAAA_CG
.....((((((........(((((((.(((.((((((((((...)))))))))).))).).))))))......((((....))))........)))))).......... (-27.16 = -27.00 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:32 2006