| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,127,722 – 1,127,821 |
| Length | 99 |
| Max. P | 0.766487 |
| Location | 1,127,722 – 1,127,821 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 93.52 |
| Mean single sequence MFE | -28.07 |
| Consensus MFE | -20.80 |
| Energy contribution | -21.48 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1127722 99 + 27905053 CAGCUGGCAGCAGGCGCAUGCAAAGUGCCUUUGUUCGCAAAUAAACAGCGGCGGCAGCAAAUACUAAAUAAUUAUUUAACGCAUAUUUGUCGCCAUCAG ..((..((((.((((((.......))))))))))..))...........((((((((.......(((((....)))))........))))))))..... ( -28.06) >DroSec_CAF1 61684 99 + 1 CAGCUGGCAGCAGGCGCAUGCAAAGUGCCUUUGUUCGCAGAUAAACAACGACGGCAGCAAAUACUAAAUAAUUAUUUAACGCAUAUUUGUCGCCAUCAG ..((..((((.((((((.......))))))))))..))...........((.(((.(((((((.....(((....))).....))))))).))).)).. ( -27.50) >DroSim_CAF1 62261 99 + 1 CAGCUGGCAGCAGGCGCAUGCAAAGUGCCUUUGUUCGCAGAUAAACAACGACGGCAGCAAAUACUAAAUAAUUAUUCAACGCAUAUUUGUCGCCAUCAG ..((..((((.((((((.......))))))))))..))...........((.(((.(((((((....................))))))).))).)).. ( -26.55) >DroEre_CAF1 62338 96 + 1 CAGCUGGCAGCAGGCGCAUGCAAAGUACCUUUGUUCGCAGAUAAACAGCGGCG---GCAAAUACUAAAUAAUUAUUUAACGCAUAUUUGUCGCCACUCG ..((((.......(((...((((((...)))))).))).......))))((((---(((((((.....(((....))).....)))))))))))..... ( -29.94) >DroYak_CAF1 82795 96 + 1 CAACUGGCAGCAGGCGCAUGCAAAGUGCCUUUGUUCGCAGAUAAACAACGGCG---GCAAAUACUAAAUAAUUAUUUAACGCAUAUUUGUCGCCACUCG ...(((((((.((((((.......))))))))))...))).........((((---(((((((.....(((....))).....)))))))))))..... ( -28.30) >consensus CAGCUGGCAGCAGGCGCAUGCAAAGUGCCUUUGUUCGCAGAUAAACAACGGCGGCAGCAAAUACUAAAUAAUUAUUUAACGCAUAUUUGUCGCCAUCAG ..((..((((.((((((.......))))))))))..))...........((.(((.(((((((.....(((....))).....))))))).))).)).. (-20.80 = -21.48 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:44 2006