Locus 2949

Sequence ID 3R_DroMel_CAF1
Location 7,889,744 – 7,889,843
Length 99
Max. P 0.907659
window4746

overview

Window 6

Location 7,889,744 – 7,889,843
Length 99
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 79.38
Mean single sequence MFE -25.54
Consensus MFE -12.54
Energy contribution -12.32
Covariance contribution -0.22
Combinations/Pair 1.38
Mean z-score -2.71
Structure conservation index 0.49
SVM decision value 1.05
SVM RNA-class probability 0.907659
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7889744 99 + 27905053
----UUUUUUUGUG-CCAUUCAGUUUUGCUUUUUAUUAAUUAACAUUCAAUUAGCGAAUACGA--UUGUGGCCU-UGCCGCAUUCAAGUGGCAUUUAAGCCUUUCAC-----------
----..(((..(((-(((((..((((((((..((..............))..)))))).))((--.((((((..-.)))))).)).))))))))..)))........----------- ( -24.24)
>DroPse_CAF1 19873 117 + 1
GCUCUUUUUUCGGGUGCAUUC-GUAUUGCAUUUUAUUAAUUAACAUUCAAUUAGCGAAAAUUAAUUCGCGGCCCUGGCUCCAUUCAAGUGGCAUUUAAGCCAUUCAUUGGGCUUUUUU
...........(((((((...-....)))........................(((((......))))).)))).(((.(((....((((((......))))))...))))))..... ( -28.60)
>DroSec_CAF1 21186 99 + 1
----UUUUUUUGUG-CCAUUCAGUUUUGCUUUUUAUUAAUUAACAUUCAAUUAGCGAAUACGA--UUGUGGCCU-UGCCGCAUUCAAGUGGCAUUUAAGCCUUUAAC-----------
----..(((..(((-(((((..((((((((..((..............))..)))))).))((--.((((((..-.)))))).)).))))))))..)))........----------- ( -24.24)
>DroEre_CAF1 21524 97 + 1
----UU--UUUGUG-CCACUCAGUUUUGCUUUUUAUUAAUUAACAUUCAAUUAGCGAAUACGA--UUGUGGCCU-UGCCGCAUUCAAGUGGCAUUUAAGCUUUUCGC-----------
----((--(..(((-(((((..((((((((..((..............))..)))))).))((--.((((((..-.)))))).)).))))))))..)))........----------- ( -26.34)
>DroYak_CAF1 21652 98 + 1
----UU-UUUUGUG-CCAUCUAGUUUUGCUUUUUAUUAAUUAACAUUCAAUUAGCGAAUGCGA--UUGUGGCCU-UGCCGCAUUCAAGUGGCGUUUAAGCCUUUCAC-----------
----..-......(-((((...((((((((..((..............))..)))))).))((--.((((((..-.)))))).))..)))))...............----------- ( -21.24)
>DroPer_CAF1 19542 117 + 1
GCUCUUUUUUCGGGUGCAUUC-GUAUUGCAUUUUAUUAAUUAACAUUCAAUUAGCGAAAAUUAAUUCGCGGCCCUGGCUCCAUUCAAGUGGCAUUUAAGCCAUUCAUUGGGCUUUUUU
...........(((((((...-....)))........................(((((......))))).)))).(((.(((....((((((......))))))...))))))..... ( -28.60)
>consensus
____UUUUUUUGUG_CCAUUCAGUUUUGCUUUUUAUUAAUUAACAUUCAAUUAGCGAAUACGA__UUGUGGCCU_UGCCGCAUUCAAGUGGCAUUUAAGCCUUUCAC___________
.....................................................((((........))))(((...((((((......)))))).....)))................. (-12.54 = -12.32 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:31 2006