Locus 2947

Sequence ID 3R_DroMel_CAF1
Location 7,883,982 – 7,884,074
Length 92
Max. P 0.648911
window4744

overview

Window 4

Location 7,883,982 – 7,884,074
Length 92
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 82.08
Mean single sequence MFE -24.92
Consensus MFE -18.94
Energy contribution -19.22
Covariance contribution 0.28
Combinations/Pair 1.09
Mean z-score -1.52
Structure conservation index 0.76
SVM decision value 0.24
SVM RNA-class probability 0.648911
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7883982 92 - 27905053
C-------------------UGCUUG---UG-----GAUCUGCGUAUGUUCUAUUUUUUAUGAUAUGCAAAAUAAGUUGCAGUUGCUUUCGACAAAGGCGACUUGCAGACAAACACAUC
.-------------------....((---((-----..((((((((((((.((.....)).))))))).....(((((((..((((....).)))..))))))))))))....)))).. ( -26.90)
>DroPse_CAF1 13578 108 - 1
CCUGGGAAU------GGGAAUGCUCGGGAUG-----GAUCUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUACUCUCAACAAAAGCAUCUCGCAGACAAACACAUC
((((((.((------....)).))))))...-----..(((((((((((..((.....))..)))))).......((((.((.....))))))...........))))).......... ( -24.70)
>DroEre_CAF1 15954 92 - 1
C-------------------UGCAUG---GG-----GAUCUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUGCUUUCGACAAAGGCGACUUGCAGACAAACACAUC
.-------------------....((---..-----(.(((((((((((..((.....))..)))))).....(((((((..((((....).)))..)))))))))))))...)).... ( -24.10)
>DroYak_CAF1 15878 97 - 1
C-------------------UGCAUG---GGGAUGGGAUCUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUGCUUUCGACAAAGGCGACUUGCAGACAAACACAUC
.-------------------......---..(((((..(((((((((((..((.....))..)))))).....(((((((..((((....).)))..))))))))))))....).)))) ( -25.90)
>DroAna_CAF1 13208 92 - 1
C-------------------UGCUCG---GG-----CAUUUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUGCUUUCGACAAAAGCAACUCGCAGACAAACACAUC
.-------------------(((...---.)-----))(((((((((.((.........)).)))))))))....((((((((((((((.....))))))))).))).))......... ( -24.10)
>DroPer_CAF1 13165 114 - 1
CCUGGGAAUGGGAAUGGGAAUGCUCGGGAUG-----GAUCUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUACUCUCAACAAAAGCAUCUCGCAGACAAACACAUC
((((((.((..........)).))))))...-----..(((((((((((..((.....))..)))))).......((((.((.....))))))...........))))).......... ( -23.80)
>consensus
C___________________UGCUCG___GG_____GAUCUGCGUAUGUUCUAUUUUUUAAGAUAUGCAAAAUAAGUUGCAGUUGCUUUCGACAAAAGCAACUCGCAGACAAACACAUC
......................................(((((((((((..((.....))..))))))......((((((..(((.......)))..)))))).))))).......... (-18.94 = -19.22 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:29 2006