Locus 2945

Sequence ID 3R_DroMel_CAF1
Location 7,878,327 – 7,878,422
Length 95
Max. P 0.887169
window4742

overview

Window 2

Location 7,878,327 – 7,878,422
Length 95
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 88.00
Mean single sequence MFE -28.38
Consensus MFE -22.98
Energy contribution -23.98
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.81
SVM decision value 0.94
SVM RNA-class probability 0.887169
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7878327 95 + 27905053
------UGCUGAUGCUCCUGCCACAUUUGCUUGUACCUUGUACCUUCGCUGUUUAUUUUUUGUGGCCCGAGUUAGGUGCGAUAUUUGAGGCAUAAGCGCCA
------....(.((((..((((.((..((.((((((((...((....((..(.........)..))....)).))))))))))..)).))))..)))).). ( -25.90)
>DroSec_CAF1 9980 95 + 1
------UGCUGAUGCUCCUGCCACAUUUGCUUGUACCUUGUAGCUUCGCUGUUUAUUUUUUGUGGCGCGAGUUAGGUGCGAUAUUUGAGGCAUAAGCGCCA
------....(.((((..((((.((..((.((((((((...((((((((..(.........)..))).)))))))))))))))..)).))))..)))).). ( -31.10)
>DroSim_CAF1 10139 95 + 1
------UGCUGAUGCUCCUGCCACAUUUGCUUGUACCUUGUAGCUUCGCUGUUUAUUUUUUGUGGCGCGAGUUAGGUGCGAUAUUUGAGGCAUAAGCGCCA
------....(.((((..((((.((..((.((((((((...((((((((..(.........)..))).)))))))))))))))..)).))))..)))).). ( -31.10)
>DroEre_CAF1 10334 94 + 1
AUGCGAUGCUGAUGCUCCUGCCACACUUGCUUGUACC-------UUCGCUGUUUAUUUUUUGUGGCGCGAGUUAGGUGCGAUAUUUGAGGCAUAAGCGCCA
..........(.((((..((((.((..((.(((((((-------(((((.(((..........)))))))...))))))))))..)).))))..)))).). ( -26.90)
>DroYak_CAF1 10214 82 + 1
------------UGCUCGUGCAACAUUUGCUUGUACC-------UUCGCUGUUUAUUUUUUGUGUCGCGAGUUAGGUGCGAUAUUUGGGGCAUAAGCGCCA
------------.(((..(((..((..((.(((((((-------(((((....(((.....)))..))))...))))))))))..))..)))..))).... ( -26.90)
>consensus
______UGCUGAUGCUCCUGCCACAUUUGCUUGUACCUUGUA_CUUCGCUGUUUAUUUUUUGUGGCGCGAGUUAGGUGCGAUAUUUGAGGCAUAAGCGCCA
.............(((..((((.((..((.((((((((......(((((.(((..........))))))))..))))))))))..)).))))..))).... (-22.98 = -23.98 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:27 2006