Locus 2944

Sequence ID 3R_DroMel_CAF1
Location 7,875,884 – 7,876,004
Length 120
Max. P 0.732837
window4741

overview

Window 1

Location 7,875,884 – 7,876,004
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.78
Mean single sequence MFE -37.33
Consensus MFE -32.21
Energy contribution -32.54
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.86
SVM decision value 0.43
SVM RNA-class probability 0.732837
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7875884 120 + 27905053
CUGGGUUUGGAAUGCGCUUUGUUGCAGUUUUCACAGUUGAGUGCGCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUCAU
.(((((.((((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...))))..))))). ( -39.86)
>DroPse_CAF1 2653 120 + 1
CUGGUGUUGGAAUGCGCUUUGUUGCAGUUUUCACAGUCGAGUACCCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUUAU
..(((..((((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...))))..)))... ( -35.46)
>DroEre_CAF1 7996 120 + 1
CUGGGUUCGGAAUGCGCUUUGUUGCAGUUUUCACAGUUGAGUGCGCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUCAU
.(((((..(((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...)))...))))). ( -38.16)
>DroYak_CAF1 7864 120 + 1
CUGGGUUUGGAAUGCGCUUUGUUGCAGUUUUCACAGUUGAGUGCGCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUCAU
.(((((.((((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...))))..))))). ( -39.86)
>DroAna_CAF1 5372 120 + 1
CCGGCUUUGGAAUGCGCUCUUUUGCAGUUUUCACAGUUGAGUGCGCUCAUUGUUUUCGCUGUCAGCGAACGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUCAU
..(((..((((..((((((..(((.........)))..))))))..((((((((..(((.(((.......))))))..))))))))......................))))..)))... ( -35.20)
>DroPer_CAF1 2671 120 + 1
CUGGUGUUGGAAUGCGCUUUGUUGCAGUUUUCACAGUCGAGUACCCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUUAU
..(((..((((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...))))..)))... ( -35.46)
>consensus
CUGGGUUUGGAAUGCGCUUUGUUGCAGUUUUCACAGUUGAGUGCGCUCAUUGUUUUCGCUGUCAGCGAGCGGCGCGUCGACAAUGAAUAAUUAGAAUUUUGUUGAAGGUCCAUUGCUCAU
........(((.((((((((((((((((....(((((.(((....))))))))....)))).))))))..))))))(((((((...............)))))))...)))......... (-32.21 = -32.54 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:26 2006