Locus 2943

Sequence ID 3R_DroMel_CAF1
Location 7,875,515 – 7,875,610
Length 95
Max. P 0.507699
window4740

overview

Window 0

Location 7,875,515 – 7,875,610
Length 95
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 82.82
Mean single sequence MFE -23.68
Consensus MFE -15.33
Energy contribution -15.72
Covariance contribution 0.39
Combinations/Pair 1.11
Mean z-score -1.75
Structure conservation index 0.65
SVM decision value -0.05
SVM RNA-class probability 0.507699
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7875515 95 + 27905053
CCAGAGUGCGAGUGCAUUAAAGUUAAAUGGACUCGGACUAAAUGCUGCAAAUUGCUGCCAUAGCCAACAGUCAUGGAUACAAACACCCGUAUCUA-------------
...((.((.((((.((((.......)))).))))((.(((...((.((.....)).))..)))))..)).)).(((((((........)))))))------------- ( -25.20)
>DroPse_CAF1 2262 103 + 1
AGAGAUGGAGAGUGCAUUAAAGUUAAAUGGACUUGGACUAAAUGCUGCAAAUAGCUGCCAUAACAAACAGU-AUGGACACA----CCAGAAUCCAGAUGUAGUAUAUA
.....(((.((((.((((.......)))).))))...))).((((((((....((((..........))))-.((((..(.----...)..))))..))))))))... ( -19.70)
>DroSec_CAF1 7177 95 + 1
CCAGAGUGCGAGUGCAUUAAAGUUAAAUGGACUCGGACUAAAUGCUGCAAAUUGCUGCCAUAGCCAACAGUCAUGGAUACAAGCACCAGUAUCUA-------------
....(((.(((((.((((.......)))).))))).)))..((((((.....((((.((((..(.....)..)))).....)))).))))))...------------- ( -26.70)
>DroSim_CAF1 7318 95 + 1
CCAGACUGCGAGUGCAUUAAAGUUAAAUGGACUCGGACUAAAUGCUGCAAAUUGCUGCCAUAGCCAACAGUCAUGGAUACAAGCACCCGUAUCUA-------------
...(((((.((((.((((.......)))).))))((.(((...((.((.....)).))..)))))..))))).(((((((........)))))))------------- ( -29.10)
>DroEre_CAF1 7638 95 + 1
CCAGAGUGAGAGUGCAUUAAAGUUAAAUGGACUCGUACUAAAUGCUGCAAAUUGCUGCCAUAGCCAGCAGUCAUGGAUACAAGCACCCGUAUCUA-------------
....((((.((((.((((.......)))).)))).))))..(((((((.....((((...))))..)))).)))((((((........)))))).------------- ( -24.10)
>DroPer_CAF1 2287 100 + 1
AGAGAUGGAGAGUGCAUUAAAGUUAAAUGGACUUGGACUAAAUGCUGCAAAUAGCUGCCAUAACAAACAGU-AUGGACACA----CCAGAAACCAGAUGU---AUAUA
.....(((.((((.((((.......)))).))))((.......((((....))))(((((((........)-)))).))..----)).....))).....---..... ( -17.30)
>consensus
CCAGAGUGAGAGUGCAUUAAAGUUAAAUGGACUCGGACUAAAUGCUGCAAAUUGCUGCCAUAGCCAACAGUCAUGGAUACAAGCACCAGUAUCUA_____________
.........((((.((((.......)))).)))).........((.((.....)).))...............(((((((........)))))))............. (-15.33 = -15.72 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:24 2006