Locus 294

Sequence ID 3R_DroMel_CAF1
Location 1,126,143 – 1,126,242
Length 99
Max. P 0.683946
window502

overview

Window 2

Location 1,126,143 – 1,126,242
Length 99
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 84.11
Mean single sequence MFE -37.90
Consensus MFE -28.79
Energy contribution -28.93
Covariance contribution 0.14
Combinations/Pair 1.28
Mean z-score -2.07
Structure conservation index 0.76
SVM decision value 0.31
SVM RNA-class probability 0.683946
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1126143 99 + 27905053
CUGCUCACUGGUUUACUUCCGGAAGAAGGAGGACCCGUGGAACGCCAUAAUUAGUGGAGCAACCACCGGGGGCAUUCUUGCUGCUAGAACUGGUGAGUU
..((((((..((((.(((((.......))))).(((((((....((((.....)))).....))).))))((((....))))....))))..)))))). ( -39.70)
>DroSec_CAF1 60049 99 + 1
CUGCUCACUGGUUUACUUCCGGAAGAAGGAGGAUCCGUGGAACGCCAUAAUUAGUGGAGCGACCACCGGGGGCAUUCUUGCUGCCAGAACUGGUGAGUU
..((((((..((((.(((((.......)))))....((((....((((.....)))).....)))).((.((((....)))).)).))))..)))))). ( -39.50)
>DroSim_CAF1 60607 99 + 1
CUGCUCACUGGUUUACUUCCGGAAAAAGGAGGAUCCGUGGAACGCCAUAAUUAGUGGAGCGACCACUGGGGGCAUUCUUGCUGCCAGAACUGGUGAGUU
..((((((..((((.(((((.......)))))....((((....((((.....)))).....))))(((.((((....)))).)))))))..)))))). ( -40.40)
>DroEre_CAF1 60604 99 + 1
CUGUUCCCUGGUUCACUUCCGGAAGAAGGAGGACCCGUGGAACUCCAUAAUUAGUGGGGCAGUCACCGGGGGCAUUCUAGCUGCUCGAACUGGUGAGUU
((((((((((((((.(((.(....).))).))))).((((....))))....)).)))))))((((((((((((.......)))))...)))))))... ( -38.00)
>DroYak_CAF1 80977 99 + 1
CUGUUCACUGGUUCACUUCCGGAAGAAGGAGGAUCCGUGGAACGCUAUAAUUAGUGGUGCGACCACCGGGGGCAUUCUCGCUGCUCGAACUGGUGAGUU
...(((((..((((.(((((.......)))))..((((((..((((((.....))))))...))).)))(((((.......)))))))))..))))).. ( -37.70)
>DroAna_CAF1 57380 90 + 1
UUGCACCCUGGUCUACUAUCGCCAGAAGGAGGAUCCGUGGAACUCGAUCAUUAGUGGAGCGGCGACUGGGGGCGUCUUGGCGGCCAGGAC---------
..((.(((..(((....(((.((....))..)))((((...(((........)))...)))).)))..)))))(((((((...)))))))--------- ( -32.10)
>consensus
CUGCUCACUGGUUUACUUCCGGAAGAAGGAGGAUCCGUGGAACGCCAUAAUUAGUGGAGCGACCACCGGGGGCAUUCUUGCUGCCAGAACUGGUGAGUU
...(((((..((((.(((((.......))))).(((((((....((((.....)))).....)))).)))((((.......)))).))))..))))).. (-28.79 = -28.93 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:43 2006