Locus 2938

Sequence ID 3R_DroMel_CAF1
Location 7,869,564 – 7,869,661
Length 97
Max. P 0.912578
window4728

overview

Window 8

Location 7,869,564 – 7,869,661
Length 97
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 90.04
Mean single sequence MFE -34.78
Consensus MFE -27.80
Energy contribution -28.00
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.80
SVM decision value 1.08
SVM RNA-class probability 0.912578
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7869564 97 - 27905053
AAGGAUCCACCUGUGAGU------------GUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGCCUGCCACACAGAGACGCAAAA
..........(((((.((------------((((((......))))))))..((((.(((((..((............))..)))))..)))).))))).......... ( -32.30)
>DroSec_CAF1 1437 97 - 1
UAGGAUCCACCUGUGAGU------------GUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGCCUGCCACACAGAGACGCAAAA
..........(((((.((------------((((((......))))))))..((((.(((((..((............))..)))))..)))).))))).......... ( -32.30)
>DroSim_CAF1 1443 97 - 1
UAGGAUCCACCUGUGAGU------------GUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGCCUGCCACACAGAGACGCAAAA
..........(((((.((------------((((((......))))))))..((((.(((((..((............))..)))))..)))).))))).......... ( -32.30)
>DroEre_CAF1 1420 109 - 1
AAGGAUCCACCUGUGAGUGUCAGUGUGAGUGUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGCCUGCCGCACUGCAACGCAAAA
.(((.....)))(((..((.((((((..((((((((......))))))))..((((.(((((..((............))..)))))..)))))))))))).))).... ( -38.60)
>DroYak_CAF1 1430 109 - 1
AAGGAUCCACCUGUGAGUGUGAGUGUGAGAGUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGUCUGCCACACAGCCACGCAAAA
.(((.....)))....(((((..((((...(((((((......)))))))..((((((((((..((............))..)))))).)))).))))..))))).... ( -38.40)
>consensus
AAGGAUCCACCUGUGAGU____________GUGUGUGCUCGAACACGCACAGGGCAAUGAGCACGCAGCCAAACUUACGCACGCUCGCCUGCCACACAGAGACGCAAAA
..........(((((...............(((((((......)))))))..((((.(((((..((............))..)))))..)))).))))).......... (-27.80 = -28.00 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:48:13 2006